DreINT0150011 @ danRer10
Intron Retention
Gene
ENSDARG00000035468 | slc25a25b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
Coordinates
chr5:31200005-31201350:+
Coord C1 exon
chr5:31200005-31200163
Coord A exon
chr5:31200164-31201197
Coord C2 exon
chr5:31201198-31201350
Length
1034 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CTCTGGAATGGTGTTGACAGGTT
3' ss Score
3.97
Exon sequences
Seq C1 exon
ATATTTGACGTGGGGGAAAGTATGTTGGTACCGGATGAGTTTACGGCAGAGGAGAAGAACACAGGAATGTGGTGGCGACACCTGGTAGCAGGAGGTGGAGCAGGCGCTGTGTCCCGTACCTGTACTGCACCTCTGGACCGCCTCAAAGTTCTCATGCAG
Seq A exon
GTACCAGACACAATCACACTACCAGTGCAGGACACTGGACACAAGATACGTAGATATGTCCAAATTTGGTATGTATTATTATGTTATTTTGCGGTTTTATGGTTCTTTGCCATATTTAAAAACACACACACTTATACATAAACACTTATATAAACATGTATATACTGTGTGATGTTCCTGGCATACATAATAAAGTTATTTAAAGTGCTTATTTTGAAAGCGTTGTGCAAACATGAAAGTTTTTAGAATGGGAAAACTATTACTTTTTTGATTACCATATTCAGCATAATCAGATTATCATAATCATGTAAACATAGCCTTACATTAACCTTAAGTCTTTGGATACAACATTAAGGTGAATAAATGGTAAGAAAATAATTTTTTTGAGTGATTTTTGAAGTAAAATGATGGTTTTCTCTTTTTAAGGTGTAAAAGTATTCCTCTGATGAAAAAGTTGAATATTCAACATCATACTAGTCTTTATTGATACAATTTCTTGAATATGCTGAATTGATTTTTTTCACCTAAATGTTGAAAACCTTCTTTATTTGAAAGGTCAAACTTATTCAGGTTTTGAGAAAAGAAAAGCATTTATTTAAAATGAATGATTTTGTAACATCCTAAATGTCATTATCGTGGCGTGTACTCATCATAGCTGTTGTTGCCACAGAGACACAAATTATTCATTAGACACTCTAGGCACAAATCCCAGTATGAAATCCCACATCAGTCGAAGTGTAAGTGTTAGTAAGCTGTTATTCACCATTACTGTACAGTCACTGCGGCTCATGATGTTCTGTACTTTGAATTAGTGCCTTGGTGTGGGTGATCATGTAAATTTAGAAAAAAAATTCCAAGTCAAACTAGAACCTGTTTCATTTGTTAGATTTTGAAGATATCAACATATTGATTTGGATAAATTGAATCATAAGACTAAAGCTGTATTCACCTTAACTTCACTCTTTGTAAATGTGTTCAGAAAACTATATTTCTTAGTAAATCGAGATGTTTTACCTCTGGAATGGTGTTGACAG
Seq C2 exon
GTTCATGCAACGCGCAGTAACAGCATGGGTATCGCTGGAGGATTCACCCAGATGATTCGCGAGGGTGGACTGCGCTCACTGTGGAGAGGCAATGGGATCAATGTTTTGAAGATTGCACCTGAATCTGCTATCAAGTTCATGGCATATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035468:ENSDART00000098163:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=62.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGACGTGGGGGAAAGTATGT
R:
CTGCTCATATGCCATGAACTTGA
Band lengths:
310-1344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]