HsaINT0151760 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128103681-128105881:+
Coord C1 exon
chr9:128103681-128103839
Coord A exon
chr9:128103840-128105728
Coord C2 exon
chr9:128105729-128105881
Length
1889 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTTCGGTCCTCCCTCCCAGGTC
3' ss Score
10.58
Exon sequences
Seq C1 exon
ATCTTTGATGTGGGTGAGAATCTAACGGTCCCGGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGACACCTGGTGGCAGGAGGTGGGGCAGGGGCCGTATCCAGAACCTGCACGGCCCCCCTGGACAGGCTCAAGGTGCTCATGCAG
Seq A exon
GTATGTAGGGAAAAGGCCCCAGACCCCTGGGGGGCCAGTTTCCACCTGGGGGATGCTGCTTGGCTAGTTTTCCCTTTCTCTGGCTGGTGCCTGCTTTGGGCCCAAACTTTTCTAACCCAATAAATTAGACTAGAATTATTGCTCAGACAGGGGGTACCAAAATGTCACTGTAGGTGACATTTTGTGCAGAGCGGATCTAATTTTATCTGAGGCATCACATTACAGGGGCATAATGTGGACAGGTGAAGCTAGCGAGACTGGGGTGAGGCAGGAACCAATTTCTGTAAGTACGTTTTGTGTACGTTACCCCACACTGGGGCCAGCAGAGCCTCACCTGACCCAGATGCCAATGGGAAGCCACGCCATTACCTTGGCCAGGTACGCAAATCCATGTCCACACAGCAGAGATAAGCTGGGCTGATGTCAAGGCAGAATTGTGAAACTGACCCACACAACGACACTGGTGGACTTTGATGTCTGAATGGTGACTGGCCACCACTTGTCCCCTTGCCCGTACCTAGTACTTCTTGTGCCAGGAGCCCGGCTTGGAAGAGCTGCCTCCTTTCTCTCCCCAGTCTGCCTTGCTGGGCCTCCCTGTGTTGCACAGAGACAAAGGAAGCAGGTGGTTCAGGGCAGAATGCCTCGGGCTTGGACTCTGCCCAGGGCACCACCACAGCTGCCTCCCTCCCTCTTGTGGCCTTGAGCAAACCCCTTTCCCTCCCAGGACTTCCCCTCCTCTGTGAAAATAGGGGCTTGAACAACTGCCTCATCCTTTTGTTTTTTTAGCAGAATTATCAGGAATGTTGTAGAGATTGAAAGCAGGCCTTGGGTGAAATCAAATGCCTGGCGTGTGCCTTTAAACCAGCATGGGTGGGGCAGCAGGAGAGAGAGGTTGGCTGTGGTTTGATCATTGTCTAAGCTGAGTGGGCATTCATTCTATTTTTTAATATGTCTTAAGTTTTTTTAATAATGAAAAACTTTGATTTTTAAAAATTATTATTATTATTATTATTATTATTATTATTATTATATTTTTTGAGACAGTCTCGCTCTGTCACCCAGGCTAGAGTACAGTGGTATGATCTCAGCTCACTGCAACCTCCCTCACTGGGTTCAAGCAATTCTACAGCCTCAGCCTCCCTAGTAGCTGGGATTATTACAGGCATGCGCTATCACCCCAGGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTCATCATGTTGGCCAGGCTGGTCTCACACTCCTCACCTCATGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCAACACTCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAATAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTACAGGGGCGCGATCTTGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACTGGTGCCTGCCACCACGCCCGGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCTGGGCTGGTCTCGAACTCCTGAACTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCTTGATTTTTTTTTTAAGTCATCTTTATGGAGATGTTCAGGACAAGGCTGGCAACCAGCAGATACCCAGTACGATGGAGCTGAGCCTCACTTAGCCGTGTTGGGTTACTTTGGGCTCATGATTCCAAGCTTGTCTTCAAAATGCACGGAAGAAAGGGCCTTCCCTTTGGCCGCAGCCGGTTGGCCAGCAGAGGCTCTTGGCCGGGTGAGGCAGCCTGTGGCCCCCCGGGTCCGTCTGACTGTTCGGTCCTCCCTCCCAG
Seq C2 exon
GTCCATGCCTCCCGCAGCAACAACATGGGCATCGTTGGTGGCTTCACTCAGATGATTCGAGAAGGAGGGGCCAGGTCACTCTGGCGGGGCAATGGCATCAACGTCCTCAAAATTGCCCCCGAATCAGCCATCAAATTCATGGCCTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=62.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGATGTGGGTGAGAATCT
R:
CTGCTCATAGGCCATGAATTTGA
Band lengths:
311-2200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains