GgaINT0125616 @ galGal4
Intron Retention
Gene
ENSGALG00000005095 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr17:4798964-4800023:-
Coord C1 exon
chr17:4799865-4800023
Coord A exon
chr17:4799117-4799864
Coord C2 exon
chr17:4798964-4799116
Length
748 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACTCTCTCTCTCTCCCCCAGGTT
3' ss Score
13.15
Exon sequences
Seq C1 exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
Seq A exon
GTAAGATGGAACAGTTCCAGTTTGTTTGAATAGCCTGAAGGCTGATCCCCTTCATATTGCCAAAGTGGTATCCAGGAGGTGATCATGTTCATTAACTTGACACAGCACTTTGGCTAGGATCAATCATGTAGCTCCTATATTGGTATTTTGGAAGTCTTCTTGAGTGATTTGAGTGGCCAAAGTCGTGTCAACAAATTGTCCTTCACTGACTAGAAAGGATAGAGAGAAGCTTTTGGGAGGAAGGCCTGCGAAGGCTCAATAGTTGGAGAGTTTTGTGACTCTGAGCGCTGAATGAATTGGATTTTTGTGAAACAGGTTCAAGTTTTGGGTGTTGAGTGGTTGTGGTGGTAAACTGGCAGAGCTGGTGTTCCATGCGAGTACTGTGTGTTACAAAGGAGTTACAAAAGCCTAGTTTTAGCTTGCCTTCTCACTGTACCTGCTCTCGAGTCATCTGAAAAGTCTGTTCTGGACAGCTGGCCCTATGCTAGGTATGGGAGATGGCTGCTTAACCTTTCCCCCCATTTCAGAGGAGTATATTGATTAGATCCATTAGTTAACATTGGACTTCACAAACAGGAAGAGAAGCTTGCTTTTCTATTGTAGAAGTTATTGAGAAGGGATTAAAGCCTTGGCAAATCTCTGGGTAAATAAAAAAAAGTGCCCTTTTGTCCCTGGATTACAGAAGAACGTAACGCTGTCGTAATCAGGACTGGAACTAATCCAGATTCACTCTCTCTCTCTCCCCCAG
Seq C2 exon
GTTCATGCCTCCCGCAGTAACAACATGTGTATCATTGGTGGTTTTACTCAAATGATCCGAGAGGGTGGAACAAGGTCACTGTGGAGGGGGAATGGCATCAACGTGCTGAAGATTGCACCAGAGTCTGCCATCAAGTTCATGGCTTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095:ENSGALT00000008172:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=62.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTGATGTAGGAGAGAATCTGAC
R:
GCTCATAAGCCATGAACTTGATGG
Band lengths:
310-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]