MmuINT0145588 @ mm9
Intron Retention
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32273244-32274726:-
Coord C1 exon
chr2:32274568-32274726
Coord A exon
chr2:32273397-32274567
Coord C2 exon
chr2:32273244-32273396
Length
1171 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGATCTCTTGTCCTCCTCAGGTC
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATCTTCGATGTCGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGGGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAG
Seq A exon
GTGAGCAGGAAAGCGAGCAGATTTTTACCCGTGGTTCATTGGAGGCTCAGCTTCCCCTCCCTCCCTCAGCTGGCTCCTTGCTTTAAAACCCGGAACCTCCCACCGCAGCTAATGAAATTGGAGTTAATGCTTCGCAGGCCCCAGTAGATCCCAGCCTAGGTGACCTTTGTGCTTAGCTGGTCTAATTATATCAGAGAAACATAAGCTGCGTATCACCTTACTTGGGCTTGTTACTTGGATTCCGTAAGTGCATCTCAGGATGGATAAGATGCCTCATGGAAGGCAGGGAGAGCAGATCCTTGCATGACCTAGAAGCAGTGCCTTTACCTTGGCTGAGCATGCAACTCCACGTCCTCAGGGCAGAGATAAGCTTGTCTGATGTCAGGGAAGCATTGTGAAATGACCCACATGAGGACACTGGTGGACTTTGATGTCTGTCTGAACAGTGACCAGTTACCCCATTTTGCTTCTGTCTGGCACTTTCGGTGCCAGGAGGCCTACCCAGAAACAGCACATGCCCCAGAACCCCCCTGGACAGACCAAAGGTGCTCGTGCAGGTGAGCAGGAAAGCGAGCAGATTTTTACCCATGATTCATGGGTGGCTCAGCTTCCCCTCCCTCCCTCAGCCGAACCTCCCACCGCAGCTAATGGAATTGGAGTGCTTTGCAGGCACTACCCCACCCCCCTTGGCATAAGTAACTACGTGGGATCTCCCTTTACCTTCCAGAAACAACGATGCAAAAGATGTAGAAAGGCTTAGCCTAGTGTGTGCTGGCCCTTCCTCCCAGCTTCCAGAGCCTCTGAGAAAACAGAAGCATGAACAGTTCCCTCTTACTCCTTTTTTAACAGAGTTCTAGGGATATAGTGAGAGAGAGCAAGAGCTGTCCTCTCTGGGTTGGTGGGGCATGCCTCTAATCCTAGCACTTGGGAAGGATGAAAATCAAGGCCAGCCTGAACTGCATAGTATGAGAGCCTGACAAAAACTAAATAAATACAATAAAACAAAATAATAAAACACCCAGCCATGCTTGCTGAGTCACAGGACATTAAATTGAATTACTTAGAGGAAAGAGCCTCTCTGAAGAGGTTCTCCAAAACGGCTCCTCCCAGGGTAGACTGTGGAGTCTTCCCTCTATCCTGCTGAGTCCCTCTGATCTCTTGTCCTCCTCAG
Seq C2 exon
GTCCATGCCTCCCGCAGCAACAACATGTGCATCGTAGGTGGATTCACACAGATGATTCGAGAAGGGGGAGCCAAGTCACTCTGGCGGGGCAACGGCATCAATGTCCTCAAAATTGCCCCTGAGTCGGCCATCAAATTCATGGCATATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-Slc25a25:NM_001164358:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=62.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGATGTCGGTGAGAATCTG
R:
TGCTCATATGCCATGAATTTGATGG
Band lengths:
310-1481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: