GgaINT0125616 @ galGal3
Intron Retention
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5433968-5435027:-
Coord C1 exon
chr17:5434869-5435027
Coord A exon
chr17:5434121-5434868
Coord C2 exon
chr17:5433968-5434120
Length
748 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACTCTCTCTCTCTCCCCCAGGTT
3' ss Score
13.15
Exon sequences
Seq C1 exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
Seq A exon
GTAAGATGGAACAGTTCCAGTTTGTTTGAATAGCCTGAAGGCTGATCCCCTTCATATTGCCAAAGTGGTATCCAGGAGGTGATCATGTTCATTAACTTGACACAGCACTTTGGCTAGGATCAATCATGTAGCTCCTATATTGGTATTTTGGAAGTCTTCTTGAGTGATTTGAGTGGCCAAAGTCGTGTCAACAAATTGTCCTTCACTGACTAGAAAGGATAGAGAGAAGCTTTTGGGAGGAAGGCCTGCGAAGGCTCAATAGTTGGAGAGTTTTGTGACTCTGAGCGCTGAATGAATTGGATTTTTGTGAAACAGGTTCAAGTTTTGGGTGTTGAGTGGTTGTGGTGGTAAACTGGCAGAGCTGGTGTTCCATGCGAGTACTGTGTGTTACAAAGGAGTTACAAAAGCCTAGTTTTAGCTTGCCTTCTCACTGTACCTGCTCTCGAGTCATCTGAAAAGTCTGTTCTGGACAGCTGGCCCTATGCTAGGTATGGGAGATGGCTGCTTAACCTTTCCCCCCATTTCAGAGGAGTATATTGATTAGATCCATTAGTTAACATTGGACTTCACAAACAGGAAGAGAAGCTTGCTTTTCTATTGTAGAAGTTATTGAGAAGGGATTAAAGCCTTGGCAAATCTCTGGGTAAATAAAAAAAAGTGCCCTTTTGTCCCTGGATTACAGAAGAACGTAACGCTGTCGTAATCAGGACTGGAACTAATCCAGATTCACTCTCTCTCTCTCCCCCAG
Seq C2 exon
GTTCATGCCTCCCGCAGTAACAACATGTGTATCATTGGTGGTTTTACTCAAATGATCCGAGAGGGTGGAACAAGGTCACTGTGGAGGGGGAATGGCATCAACGTGCTGAAGATTGCACCAGAGTCTGCCATCAAGTTCATGGCTTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095:ENSGALT00000008172:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=51.6)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTGATGTAGGAGAGAATCTGAC
R:
GCTCATAAGCCATGAACTTGATGG
Band lengths:
310-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]