HsaINT0151873 @ hg19
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6430020-6432215:-
Coord C1 exon
chr19:6432060-6432215
Coord A exon
chr19:6430173-6432059
Coord C2 exon
chr19:6430020-6430172
Length
1887 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
AGGGTCCTCCCTCCACCCAGGTC
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTACTGGACACAGGAGAGCAGCTGATGGTCCCCGTGGAAGTCCTGGAAGTGGATAACAAGGAGGCCTTGTGGAAGTTTCTACTCTCAGGAGCTATGGCCGGGGCGGTGTCTCGCACGGGCACGGCACCTCTGGACAGAGCCAAGGTGTACATGCAG
Seq A exon
GTTTGTGTGGGTTGGGGGGAGGACGGGACCCAGCGCTGGAGCCACTGGGGAGAACGTGGGGTGAGGACAGATGGAGTTGACGTGGATGGAGTTCAGGATAGGAGTGCTGGCTGGAGTTGGGCTCTCCTGGACTAGCTGAGATTGAGGTTGTGGATGGTGATAGAGCTGGTGTGGACATGGCTTGGAGTCGAGTTTGAGGAGTTGAGAGAACTTGCCAGGGACAGGGACCAACGCTGGGCCAAGGTGGGGGTTGGAGGTCAGGGAATTGGGGATGGGGTCTTTGGACGAGTTTAAAGACAAGGTAGGGGCCAGGTGCAGTGGCTCATGCCTCTAATGCCAGCACTTTGGGAGGCCCAGGGGAGGTAGATCATCTGGGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGTCGGGCATGGTGGTGCGTGCCTGTAGTCCCAGCTACATAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCGAGATTGCATCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAGAAAGAAAAAAAAAAAAGGCAACATAGAACTGGAGCTACCTCAAGCAGGATATCTCACACCCATAGTCTCAGCTGCTCAGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGGAGTTGGAGGCTGCAGTGAGCCATGATCATGCCACAAACTCCAGCCTGGGTGACAGAGCGAGATCCCTGGCTGAAAAAATAAACGGGTGCAGTGGCTCACTTTGGGAGGCCAAGGAGGGAGGATTACTTGAGCTTAGGAGTTTGAGACCAGCTGGGCAATATAGTCAGACCACATCTCTACAAAATAATAATTAATTAATTAATTAATTAAAAATTTAAAAAGGAGTCGGGCATGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAAGTGGGAAGATCGCTTGAGCCCAAGAGTTTGAGACCAGCCTGGGCAACATAGTAAGACCCCATCTATACAAAAAATTTTACAAAATTAGCCTGCCATGGTAGCACGCACCTGTAGTCCCAGCTACTTGGAAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTTGGGGCTGCAGTGAGCTGTGATTGCACCACTGCATTCCGGCCTGGGCAACAGAACAAGATCCTGTCTCGAAAACATAAACAAACAAAAAAACAAGAAAGAAAAGGAAAAGAAGGCCAGGCGCGGTGGCTGATGCCTGTAATCCCAGCAATTTGGGGGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGCAAACCCCCAGCTCTACTAAAAATACAAAAATAAGCCAGGCGTGGTGACACTAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCCTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCCCCCGACCGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCAAAAAAAAAAAAAAAGAAGGAAGGGAGGAACGGAGGAAGGGAGGGAGGGAGGGAACAAAAAGGGAGAAAGAAAGGAAAGGATGGAAGGAAGAAAGAGAGAGAGAAAAAGACTGAGGAGATGAAGAGGAGGGGTGAGGTGGGAATGTAGGTTGATGTTGGCTTTGGGTCAGGGTTGCATGCGATTCTAGAACTGGCCGGGGAAGGAGCTGAAGAAGGAATGGGGATGGGATGGGGATGGGTTGGGGTTGGGTGGCTTGGGAGGTCCCGGTGGGGCTGCGCTTGGGGCAGGGATGGGGACGGAGACAGAGGCGAGCAGGGGCTCCTCCAGGGTCCTCCCTCCACCCAG
Seq C2 exon
GTCTACTCCTCCAAGACGAACTTCACCAACCTGCTGGGGGGGCTACAGAGCATGGTCCAGGAGGGCGGCTTCCGCTCCCTGTGGCGGGGCAACGGCATCAACGTGCTCAAGATTGCTCCTGAGTATGCCATCAAGTTCTCCGTATTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-SLC25A41:NM_173637:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.5=63.5)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.8=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGGAGAGCAGCTGATG
R:
TGCTCGAATACGGAGAACTTGA
Band lengths:
302-2189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)