MmuINT0145697 @ mm10
Intron Retention
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57038530-57039973:-
Coord C1 exon
chr17:57039818-57039973
Coord A exon
chr17:57038683-57039817
Coord C2 exon
chr17:57038530-57038682
Length
1135 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTACCCCTCTTCCTCCCCAGGTG
3' ss Score
13.55
Exon sequences
Seq C1 exon
GTTCTGGACACGGGAGAGCAGCTGATGGTCCCTGTGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCTGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCCAGGGTGTACATGCAG
Seq A exon
GTTTGTCCACGGGGCTGGGACCCTCTGTGAGGACAGTAAAGACAGAGTTGATGGAACTCAGGATGGACTGGAGCTAGACATAGAGCTCTCAAAAACTTGTTGCTGGGCTGGAGAGACGGCGCAGTGCTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGCTCAATTCCTAGTAACCACATGGCGGCTCACAACCATCTGCAATGGGATCTGATACCCTCTTCTGGTGTGTCAGGAGAGAGCAATGGTGTACTCTCATATACATAAAATAAATAAATATTTTTTAAAAGTTGTTGCTGAGGCTGAAGTTGTGGAAGATGGGGACAGGAAGTAGAGTCAAGTTGGGGCTAGGTTTAGAGAACTCCAGGCACAGAGGCTAACATGAGACTAGGTAGAAAGGTTTGAAGATATGTGGGTCGTGGGTGGTATCTTGCTGGGAGATGTTTGCTGGGGGTGGATGAAGATGGACCTCAAGGCGTCACGCATACCAGATAAGCATTCACTGCTAAGCAACGTTCCCAGACTTCCTTTCTTTTGAAAAATTTATTTTTATTTTATATGGTTGAGTTTGACTGTGTATCTGTGCACTGTGTACATGTAGTGCTGCTGGATGCCAGAAGAGGGCGCTGGATCCTCCTAGAACCGGAGTTATGGGTGGTTGTGAGAGAGCTGGGAACAGACAAGGTTCCTCTGCAAGAGATGTTCTTGCACCCTGAGCCATCATCCCAGCCACCAGCCCTAACTGTCCCACCAGCCGCCCTCCTGTCACATTTAATTTCCGGGCATCTCAGTAAGTAGCCCAGATAGCGCAGAAAGAACTTGAACTACAATATTCCTGACTCAATATACCAAGTAGATGAGATCTACCTAGTGGCACAAGCCCGTGATGCTAGCTATTCCCGAGGCTGAAGCCAGAGGATCTCCAGTTCAAGTCCAGCTCAATTTTAGAGAGAAGACCGTGTGTCAAAATACAAAATAAAAGGCATGGCTCAGGGGTGGAGCCTAGAATCCCTCAGTGAGCGTCTGGGGGCGTGGGCAGAAGTGGAGCCCTCACCTAGAAACCCACTTAGATAAGGGGCTTAAGGAAGGACACCAGGCGGGCTCCCAGGGCTGCTTACCCCTCTTCCTCCCCAG
Seq C2 exon
GTGTACTCCTCCAAGAGCAACTTCAGAAACCTGCTGAGTGGACTGCGGAGCCTGGTCCAGGAGGGCGGCGTCCGCTCCCTCTGGCGGGGCAATGGCATCAACGTGCTCAAGATCGCCCCAGAGTATGCTATCAAGTTCTCTGTCTGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486:ENSMUST00000058661:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=63.5)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGACACGGGAGAGCAG
R:
TGCTCACAGACAGAGAACTTGA
Band lengths:
307-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types