HsaINT0151873 @ hg38
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25 member 41 [Source:HGNC Symbol;Acc:HGNC:28533]
Coordinates
chr19:6430009-6432204:-
Coord C1 exon
chr19:6432049-6432204
Coord A exon
chr19:6430162-6432048
Coord C2 exon
chr19:6430009-6430161
Length
1887 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
AGGGTCCTCCCTCCACCCAGGTC
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTACTGGACACAGGAGAGCAGCTGATGGTCCCCGTGGAAGTCCTGGAAGTGGATAACAAGGAGGCCTTGTGGAAGTTTCTACTCTCAGGAGCTATGGCCGGGGCGGTGTCTCGCACGGGCACGGCACCTCTGGACAGAGCCAAGGTGTACATGCAG
Seq A exon
GTTTGTGTGGGTTGGGGGGAGGACGGGACCCAGCGCTGGAGCCACTGGGGAGAACGTGGGGTGAGGACAGATGGAGTTGACGTGGATGGAGTTCAGGATAGGAGTGCTGGCTGGAGTTGGGCTCTCCTGGACTAGCTGAGATTGAGGTTGTGGATGGTGATAGAGCTGGTGTGGACATGGCTTGGAGTCGAGTTTGAGGAGTTGAGAGAACTTGCCAGGGACAGGGACCAACGCTGGGCCAAGGTGGGGGTTGGAGGTCAGGGAATTGGGGATGGGGTCTTTGGACGAGTTTAAAGACAAGGTAGGGGCCAGGTGCAGTGGCTCATGCCTCTAATGCCAGCACTTTGGGAGGCCCAGGGGAGGTAGATCATCTGGGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGTCGGGCATGGTGGTGCGTGCCTGTAGTCCCAGCTACATAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCGAGATTGCATCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAGAAAGAAAAAAAAAAAAGGCAACATAGAACTGGAGCTACCTCAAGCAGGATATCTCACACCCATAGTCTCAGCTGCTCAGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGGAGTTGGAGGCTGCAGTGAGCCATGATCATGCCACAAACTCCAGCCTGGGTGACAGAGCGAGATCCCTGGCTGAAAAAATAAACGGGTGCAGTGGCTCACTTTGGGAGGCCAAGGAGGGAGGATTACTTGAGCTTAGGAGTTTGAGACCAGCTGGGCAATATAGTCAGACCACATCTCTACAAAATAATAATTAATTAATTAATTAATTAAAAATTTAAAAAGGAGTCGGGCATGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAAGTGGGAAGATCGCTTGAGCCCAAGAGTTTGAGACCAGCCTGGGCAACATAGTAAGACCCCATCTATACAAAAAATTTTACAAAATTAGCCTGCCATGGTAGCACGCACCTGTAGTCCCAGCTACTTGGAAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTTGGGGCTGCAGTGAGCTGTGATTGCACCACTGCATTCCGGCCTGGGCAACAGAACAAGATCCTGTCTCGAAAACATAAACAAACAAAAAAACAAGAAAGAAAAGGAAAAGAAGGCCAGGCGCGGTGGCTGATGCCTGTAATCCCAGCAATTTGGGGGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGCAAACCCCCAGCTCTACTAAAAATACAAAAATAAGCCAGGCGTGGTGACACTAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCCTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCCCCCGACCGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCAAAAAAAAAAAAAAAGAAGGAAGGGAGGAACGGAGGAAGGGAGGGAGGGAGGGAACAAAAAGGGAGAAAGAAAGGAAAGGATGGAAGGAAGAAAGAGAGAGAGAAAAAGACTGAGGAGATGAAGAGGAGGGGTGAGGTGGGAATGTAGGTTGATGTTGGCTTTGGGTCAGGGTTGCATGCGATTCTAGAACTGGCCGGGGAAGGAGCTGAAGAAGGAATGGGGATGGGATGGGGATGGGTTGGGGTTGGGTGGCTTGGGAGGTCCCGGTGGGGCTGCGCTTGGGGCAGGGATGGGGACGGAGACAGAGGCGAGCAGGGGCTCCTCCAGGGTCCTCCCTCCACCCAG
Seq C2 exon
GTCTACTCCTCCAAGACGAACTTCACCAACCTGCTGGGGGGGCTACAGAGCATGGTCCAGGAGGGCGGCTTCCGCTCCCTGTGGCGGGGCAACGGCATCAACGTGCTCAAGATTGCTCCTGAGTATGCCATCAAGTTCTCCGTATTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240:ENST00000597558:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.5=63.5)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.8=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGGAGAGCAGCTGATG
R:
TGCTCGAATACGGAGAACTTGA
Band lengths:
302-2189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains