RnoEX0082862 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11848531-11851941:-
Coord C1 exon
chr15:11851690-11851941
Coord A exon
chr15:11849917-11850032
Coord C2 exon
chr15:11848531-11848599
Length
116 bp
Sequences
Splice sites
3' ss Seq
TACTTATGCTTGTTTCCTAGAAC
3' ss Score
7.14
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
AAAGGAGCTGGCTATCACCTGGACTTGCTCATGGTTGCTGTCATGTTGGGAGTCTGCTCCATCATGGGCCTGCCGTGGTTTGTGGCTGCAACAGTGTTGTCTATAAGTCATGTCAACAGCTTAAAAGTAGAGTCTGAATGTTCTGCTCCAGGGGAACAGCCCAAGTTCCTCGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAG
Seq A exon
AACAGAGATTTTCAATGTCTACTCCAAGGGTCTTTTGGAGTCCTGATGTCCTCTCAGCATTTCACTGGGTCTTCTATTCTAAGGGCTGCAGATCTGTGAAAGGCAGAGTTTTTCAT
Seq C2 exon
TTTATTCCGATGCCAGTTCTATATGGTGTTTTCCTTTATATGGGAGTTTCTTCTCTGAAAGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'31-35,'31-34,32-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=PD(3.4=48.5)
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
ENSRNOT00000008759fB13737
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTGTCATGTTGGGAGT
R:
ACACCATATAGAACTGGCATCGG
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]