RnoEX0082863 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11846695-11851941:-
Coord C1 exon
chr15:11851690-11851941
Coord A exon
chr15:11848531-11848599
Coord C2 exon
chr15:11846695-11846868
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTAGTAATTTTATTTGCAGTTT
3' ss Score
5.04
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAAGGAGCTGGCTATCACCTGGACTTGCTCATGGTTGCTGTCATGTTGGGAGTCTGCTCCATCATGGGCCTGCCGTGGTTTGTGGCTGCAACAGTGTTGTCTATAAGTCATGTCAACAGCTTAAAAGTAGAGTCTGAATGTTCTGCTCCAGGGGAACAGCCCAAGTTCCTCGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAG
Seq A exon
TTTATTCCGATGCCAGTTCTATATGGTGTTTTCCTTTATATGGGAGTTTCTTCTCTGAAAGGAATTCAG
Seq C2 exon
TTTTTTGACCGTATCAAATTATTTGGAATGCCTGCCAAGCACCAGCCGGACCTGATCTACCTCCGCTATGTCCCTCTCTGGAAGGTGCACGTGTTCACGGTCGTCCAGCTGACCTGCCTGGTTCTGCTCTGGGTGATCAAAGCCTCTGCTGCTGCAGTAGTTTTTCCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'31-36,'31-35,33-36
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
ENSRNOT00000008759fB13737
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCTCTCTGTGTTCATGA
R:
GAGGCTTTGATCACCCAGAGC
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]