GgaEX1053608 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39026935-39029965:-
Coord C1 exon
chr2:39029714-39029965
Coord A exon
chr2:39027512-39027580
Coord C2 exon
chr2:39026935-39027108
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGTTTTCCTCTGCAGTTT
3' ss Score
8.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAAGGCTGTGGTTATCATCTTGATCTTTTCATGGTTGGTATTATGTTGGGAGTCTGTTCCATAATGGGCTTACCGTGGTTTGTCGCAGCAACTGTCCTGTCTATAAGTCATGTTAACAGCCTTAAAGTTGAATCTGAGTGTTCTGCACCAGGAGAGCAACCAAAGTTTTTGGGAATCCGGGAGCAGCGAGTGACAGGATTGATGATTTTTGTCCTGATGGGGCTGTCAGTGTTCATGACCTCTGTGTTAAAG
Seq A exon
TTTATTCCAATGCCAGTTCTGTACGGTGTCTTTCTTTACATGGGAGTGTCTTCATTAAAGGGCATTCAG
Seq C2 exon
TTTTTTGACCGTATAAAATTGTTTGGAATGCCTGCCAAGCATCAACCTGACCTGATATATCTGCGTTATGTACCACTCTGGAAGGTCCATATCTTTACAGTTATTCAGCTCACTTGTCTAGTTCTTTTGTGGGTGATAAAAGCCTCTGCAGCTGCTGTTGTTTTCCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'52-49,'52-48,54-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
ENSGALT00000018603fB12111
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTTGGGAATCCGGGAGC
R:
TGGACCTTCCAGAGTGGTACA
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]