BtaEX0033350 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1769848-1776238:-
Coord C1 exon
chr22:1775987-1776238
Coord A exon
chr22:1771351-1771419
Coord C2 exon
chr22:1769848-1770021
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTGATCATTTTACTTCCAGTTC
3' ss Score
8.12
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAAGGAGCTGGCTACCACCTTGACCTGCTCGTGGTTGGCGTCATGCTGGGAGTGTGCTCTGTCATGGGACTTCCATGGTTTGTGGCTGCAACCGTGTTGTCCATAAGTCACGTCAACAGCCTGAAAGTGGAATCTGAATGCTCTGCTCCTGGGGAGCAGCCCAAGTTTTTGGGCATTCGTGAACAGCGGGTGACAGGGCTAATGATTTTTATTCTAATGGGCCTGTCTGTGTTCATGACTTCAGTACTAAAG
Seq A exon
TTCATTCCAATGCCTGTTCTGTATGGTGTTTTCCTTTATATGGGAGTTTCCTCATTAAAAGGAATCCAG
Seq C2 exon
TTCTTTGACCGTATTAAGCTGTTTGGCATGCCAGCCAAGCACCAGCCCGACCTGATTTACCTGCGTTACGTGCCTCTCTGGAAGGTGCATGTCTTCACCGTCGTCCAGCTCACCTGCCTGGTCCTCCTGTGGGTGATAAAAGCCTCTGCTGCTGCAGTCGTTTTCCCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'40-37,'40-36,41-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTGTCTGTGTTCATGAC
R:
TATCACCCACAGGAGGACCAG
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development