DreEX0073095 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42800194-42802775:-
Coord C1 exon
chr16:42802524-42802775
Coord A exon
chr16:42800475-42800543
Coord C2 exon
chr16:42800194-42800367
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTAACATCTCTATAGTTT
3' ss Score
6.91
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
AAAGGCTGCGGGTATCACCTTGATCTTTTGGTGGTGGCTGTGATGCTCGGCGTGTGCTCCATCATGGGTTTGCCCTGGTTTGTCGCTGCCACAGTCCTCTCCATCTCTCATGTCAACAGTCTGAAGGTGGAGTCGGAGTGTTCGGCTCCAGGAGAACAGCCCAAGTTCCTTGGCATCCGTGAGCAGAGGGTCACCGGCCTCATGATCTTTGTGCTTATGGGACTTTCTGTTTTTATGACATCGATACTCAAG
Seq A exon
TTTATACCAATGCCTGTGTTATATGGAGTGTTCCTCTACATGGGTGTCTCCTCACTGAGAGGCATACAG
Seq C2 exon
TTCTTTGACCGTATTAAGCTGTTTGGGATGCCAGCAAAGCACCAGCCTGACCTGATCTACCTGAGATACGTGCCACTGTGGAAGGTTCACATATTCACATTAGTTCAGCTCACCTGCCTGGTGCTTCTGTGGGTCATTAAAGTGTCTGCAGCCGCTGTCGTCTTTCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'27-26,'27-25,28-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.3=100)
A:
PF0095516=HCO3_cotransp=FE(4.5=100)
C2:
PF0095516=HCO3_cotransp=PD(6.8=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTCCTTGGCATCCGTGA
R:
CCTTCCACAGTGGCACGTATC
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]