MmuEX6039648 @ mm9
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15607691-15614736:+
Coord C1 exon
chr14:15607691-15607942
Coord A exon
chr14:15611340-15611408
Coord C2 exon
chr14:15614563-15614736
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTAGAAATTTTATTTACAGTTT
3' ss Score
4.52
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAAGGAGCTGGCTACCACCTTGACTTGCTCATGGTTGGTGTCATGTTGGGAGTCTGCTCTATCATGGGCTTGCCGTGGTTTGTGGCTGCGACAGTGTTGTCTATAAGTCATGTCAACAGCTTGAAAGTGGAGTCTGAGTGTTCTGCTCCAGGGGAGCAGCCCAAGTTTCTGGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAG
Seq A exon
TTTATCCCAATGCCAGTTTTGTACGGTGTTTTTCTTTATATGGGAGTTTCATCGTTGAAAGGAATTCAG
Seq C2 exon
TTTTTTGACCGTATCAAGTTATTTGGAATGCCTGCCAAGCACCAGCCCGACCTAATCTACCTCCGCTATGTCCCCCTGTGGAAGGTGCACGTGTTCACGGTCGTCCAGCTGACCTGCCTAGTCCTGCTGTGGGTGATCAAAGCCTCTGCTGCTGCAGTAGTTTTTCCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCTCTCTGTGTTCATGA
R:
ATCACCCACAGCAGGACTAGG
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: