GgaEX1053608 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38443499-38446529:-
Coord C1 exon
chr2:38446278-38446529
Coord A exon
chr2:38444076-38444144
Coord C2 exon
chr2:38443499-38443672
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGTTTTCCTCTGCAGTTT
3' ss Score
8.81
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAAGGCTGTGGTTATCATCTTGATCTTTTCATGGTTGGTATTATGTTGGGAGTCTGTTCCATAATGGGCTTACCGTGGTTTGTCGCAGCAACTGTCCTGTCTATAAGTCATGTTAACAGCCTTAAAGTTGAATCTGAGTGTTCTGCACCAGGAGAGCAACCAAAGTTTTTGGGAATCCGGGAGCAGCGAGTGACAGGATTGATGATTTTTGTCCTGATGGGGCTGTCAGTGTTCATGACCTCTGTGTTAAAG
Seq A exon
TTTATTCCAATGCCAGTTCTGTACGGTGTCTTTCTTTACATGGGAGTGTCTTCATTAAAGGGCATTCAG
Seq C2 exon
TTTTTTGACCGTATAAAATTGTTTGGAATGCCTGCCAAGCATCAACCTGACCTGATATATCTGCGTTATGTACCACTCTGGAAGGTCCATATCTTTACAGTTATTCAGCTCACTTGTCTAGTTCTTTTGTGGGTGATAAAAGCCTCTGCAGCTGCTGTTGTTTTCCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'39-40,'39-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTTGGGAATCCGGGAGC
R:
TGGACCTTCCAGAGTGGTACA
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]