RnoEX0083456 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66922362-66925906:-
Coord C1 exon
chr14:66925883-66925906
Coord A exon
chr14:66923595-66923612
Coord C2 exon
chr14:66922362-66922512
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTGATCTTTATTTTTTGCAGGAA
3' ss Score
9.97
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTAAAGAGCAGTATTTCATTCCAG
Seq A exon
GAATTCACCATTTGGCCT
Seq C2 exon
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCAGACTTGGCTTGTCCTGAAAAATGTCGCTGTGAAGGGACCACAGTAGACTGCTCCAATCAAAAACTCAACAAAATCCCAGACCATATTCCCCAGTACACAGCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'19-22,'19-21,20-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Inclusion Isoform:
ENSRNOT00000081601fB13835
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]