RnoEX0084316 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100426766-100429959:+
Coord C1 exon
chr9:100426766-100426861
Coord A exon
chr9:100429390-100429489
Coord C2 exon
chr9:100429843-100429959
Length
100 bp
Sequences
Splice sites
3' ss Seq
CATACTTCCTTATCCTGTAGGGC
3' ss Score
10.31
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACCCACTACTCCGGTGCCGCTCAAGAACACAGAGGCCCCTGAGCAGGCCCGTCTGGCCCTTCAGCTACCCAAGAACAACAGCAAGGACACAGAAA
Seq A exon
GGCTGCTGTAAACATCTCTGGGCATTATGCACAGTACCTAAAATTCATATGGAAATGCAAGATTCAGGATAGCAAAACATTTTCTGAAAAGAGGAAACAG
Seq C2 exon
GTACCCCTGGCAGCTGTTCAGAAGACACCTGTCAGAATGGAGGCACCTGTGTCCCAGGTGCCAATGCCCACAGCTGTGACTGCAGGCCTGGGTTCAAAGGCAGACACTGTGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=77.5)
Main Inclusion Isoform:
ENSRNOT00000022290fB13971
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCACTACTCCGGTGCC
R:
AGCTCACAGTGTCTGCCTTTG
Band lengths:
211-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]