RnoEX0084969 @ rn6
Exon Skipping
Gene
ENSRNOG00000014082 | Sp7
Description
Sp7 transcription factor [Source:RGD Symbol;Acc:631377]
Coordinates
chr7:143958858-143967289:-
Coord C1 exon
chr7:143967189-143967289
Coord A exon
chr7:143966745-143966772
Coord C2 exon
chr7:143958858-143960123
Length
28 bp
Sequences
Splice sites
3' ss Seq
CCTTGGGACCCGGTCCCCAGCCT
3' ss Score
2.97
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GACCTCTTGAGAGGAGACGGGACAGCCAACCCTAGCCTCCCCAGGTACAGATACTGGGCTGCTCTGGGGGACTGCCCACAGCTGTCTATTGGATTTTTGGG
Seq A exon
CCTGAGGATGGCGTCCTCTCTGCTTGAG
Seq C2 exon
GAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTGGCTCCAGCCCTCTGCGAGACTCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCCCCTGCAGGCAGTCCCCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTCCCCACTCATTTCCTGGGCCCACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAGCTCTTCTGACTGCCTGCCTAGTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGGTACAAGGCGGGCATCCATGCAGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGGACATGCACCCTGGGGGCAATTGGTTAGGTGGTGGGCAGGGCCAGGGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014082-'1-3,'1-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.714 C2=0.625
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGAGGAGACGGGACAG
R:
GGACTGGAGCCATAGTGAGCT
Band lengths:
123-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]