RnoEX0086157 @ rn6
Exon Skipping
Gene
ENSRNOG00000001141 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:RGD Symbol;Acc:1560213]
Coordinates
chr12:45855757-45859175:+
Coord C1 exon
chr12:45855757-45855849
Coord A exon
chr12:45857531-45857649
Coord C2 exon
chr12:45859019-45859175
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGAATGACCTTCAGAAG
3' ss Score
4.5
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
ATCTCGAAGCCGGAAGTCTCACCGACATAGACATCACCGATGCCCCTCAAGGTCCCAGAGCTCAGAACTGCGCTCCCCCAGCTGCGAGAGCAG
Seq A exon
AAGGCCGGAGAGCAAGCCAAGAGCTGGTTGTGAGGGTCGTATACTCAGGAGAATGGTCTGGAAGATTCCAAGCAGAGAGATAGTCCAGAACAAGAATCAGAGAAGACAGTGCTTTACAG
Seq C2 exon
GCACCGAGGTCGGTCTCCTGAGGAAGGGCGGAAATCCCGCCGAACACATTCCCGACGCTGCTCCAAGAACCACTGCAAGGTCAGCCCAGAGGCCCGGTCCAGCCACCTGCCCAGCCAGCCCCTCCAGAGGCTCGGCTTCCTGTCAGCCAGGGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001141-'9-15,'9-14,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.976 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001507fB14345
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCGAAGCCGGAAGTCTCA
R:
GACAGGAAGCCGAGCCTCT
Band lengths:
237-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]