RnoEX0086159 @ rn6
Exon Skipping
Gene
ENSRNOG00000001141 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:RGD Symbol;Acc:1560213]
Coordinates
chr12:45852637-45859175:+
Coord C1 exon
chr12:45852637-45852687
Coord A exon
chr12:45855757-45855849
Coord C2 exon
chr12:45859019-45859175
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTTCCCACCCCAAGATC
3' ss Score
7.34
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TTCCTGCAGCCCTAAAAGCAAAAGACGGGAAGAGAAGAGGCACAAAAAACA
Seq A exon
ATCTCGAAGCCGGAAGTCTCACCGACATAGACATCACCGATGCCCCTCAAGGTCCCAGAGCTCAGAACTGCGCTCCCCCAGCTGCGAGAGCAG
Seq C2 exon
GCACCGAGGTCGGTCTCCTGAGGAAGGGCGGAAATCCCGCCGAACACATTCCCGACGCTGCTCCAAGAACCACTGCAAGGTCAGCCCAGAGGCCCGGTCCAGCCACCTGCCCAGCCAGCCCCTCCAGAGGCTCGGCTTCCTGTCAGCCAGGGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001141_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGGGAAGAGAAGAGGCA
R:
GACAGGAAGCCGAGCCTCT
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]