DreEX0075262 @ danRer10
Exon Skipping
Gene
ENSDARG00000086327 | srrm4
Description
serine/arginine repetitive matrix 4 [Source:ZFIN;Acc:ZDB-GENE-050208-34]
Coordinates
chr5:15276814-15294498:+
Coord C1 exon
chr5:15276814-15276864
Coord A exon
chr5:15285932-15286006
Coord C2 exon
chr5:15294360-15294498
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCCATTGGTTACCATTCAGGTC
3' ss Score
5.79
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGGCTCGAGCTCCAGACGTAAAAGGAAGGAGGACAAAAAACACAAAAAGAG
Seq A exon
GTCAAGGAGTCACTCTCATCGCAGACACCGGCACCGGAAAGCAGAAATTAGGAGCTCCTCCTGCATGGAAAACAG
Seq C2 exon
ATCTGAAGATTGTGAAAAATCGGGTTTCAGAGACGGCGGTCGTTCATCAGATGTCCACGGAGGCGACGCATGCAGGTCGGCAGTCAAGCTGACCAATAAAATCTCCTCTAAGTGCTGCTGCCACTTTTCTGAAAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086327-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=0.532
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGAGCTCCAGACGTAAAA
R:
TTCAGAAAAGTGGCAGCAGCA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]