MmuEX7002987 @ mm10
Exon Skipping
Gene
ENSMUSG00000063919 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:MGI Symbol;Acc:MGI:1916205]
Coordinates
chr5:116467432-116471292:-
Coord C1 exon
chr5:116471242-116471292
Coord A exon
chr5:116467768-116467860
Coord C2 exon
chr5:116467432-116467588
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCCCTCATCCCAAGATC
3' ss Score
6.96
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTCCTGTAGCCCTAAAAGCAAAAGACGGGAAGAGAAGAGGCACAAAAAACA
Seq A exon
ATCTCGAAGCCGGAAGTCTCACCGACATAGACATCACCGATGCCCCTCAAGGTCCCAGAGTTCGGAACTGCGCTCCCCCAGCTGCGAGAGCAG
Seq C2 exon
GCATCGAGGTCGGTCCCCTGAGGAAGGGCGGAAATCCCGCCGAACACACTCCCGCCGCTGCTCCAAGAACCACTGCAAGGTCAGCCCAGACGCCCGGTCCAGCCACCTGCCCAGCCAGCCCCTCCCGAGGCTCGGCTTCCTGTCAGCCAGGGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063919-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGGGAAGAGAAGAGGCA
R:
CTGACAGGAAGCCGAGCCTC
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types