GgaEX1001780 @ galGal3
Exon Skipping
Gene
ENSGALG00000007388 | SRRM4
Description
NA
Coordinates
chr15:10006593-10010382:-
Coord C1 exon
chr15:10010332-10010382
Coord A exon
chr15:10007665-10007757
Coord C2 exon
chr15:10006593-10006743
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTGCTTCCCAAAGCTC
3' ss Score
6.82
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TTCCTCAAGCCCCAAAAGTAAGAGAAAGGAAGAAAGAAAACACAAAAAACA
Seq A exon
CTCCCGTGGGCGCACCCGGAAAGCTCACCGCCACCGCCGCTGCCACTCTCGCTCAGAGAGCTCTGACTCCTATTCCCCGAGCTGCCGGAGCAG
Seq C2 exon
GCACAGAGCCAGGTCTCGGGAGGAAGGGCGTAAAGCACGGCGGAGACGCTCCCAGCGCCATGCAAAAGTCCCAGCAAAGAGAAGCTCCTCTGCAGAGGTTCAGGCCAGCCAAACCCTCCCACTGCACAGCTTCCTGTCTCCTAAGGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388-'6-7,'6-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAAGCCCCAAAAGTAAGA
R:
CTGTGCAGTGGGAGGGTTTG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]