BtaEX6072790 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008676 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
Coordinates
chr17:58461043-58467267:-
Coord C1 exon
chr17:58467217-58467267
Coord A exon
chr17:58464000-58464098
Coord C2 exon
chr17:58461043-58461199
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCACCCCCACCCCTCAAGATC
3' ss Score
4.4
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTCCTCCAGCCCAAAAAGCAGAAGAAAGGAAGAGAAGAGGCACAAAAAACA
Seq A exon
ATCGCGAAGCCGGCCCCGAAAATCTCGCCGCCGCCGCCATCACCACTGCCCCTCACGGTCCCAGAGCTCAGAGTCCCGCTCCTCAAGCTGCGACAGCAG
Seq C2 exon
GCACCGTGGCCGGTCCCCCGAGGGAGGGCGGAAGTCCCGTCGAAGGCACTCTCGCCGCTGCTCCAAGACCCTCTGCAAGGCCAGCCCAGAGGCCCGGTCCAGCCCCCAACCCAGCCAGCCCCTCCAGATGCTCAGCTTCCTGTCAGCCAGGGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008676-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCCAAAAAGCAGAA
R:
TGAGCATCTGGAGGGGCTG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]