HsaEX6069457 @ hg19
Exon Skipping
Gene
ENSG00000139767 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:29389]
Coordinates
chr12:119559875-119568639:+
Coord C1 exon
chr12:119559875-119559925
Coord A exon
chr12:119563186-119563284
Coord C2 exon
chr12:119568483-119568639
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTCATCCCCCCAAGATC
3' ss Score
6.61
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTCCTCTAGCCCAAAAAGCAAAAGAAGAGATGAGAAGAGGCACAAGAAACA
Seq A exon
ATCTCGAAGCCGGCCCCGAAAGTCTCACCGCCACCGCCATCACCGCTGCCCCTCGCGGTCCCAGAGCTCGGAGTCCCGCCCCTCAAGCTGTGAGAGCAG
Seq C2 exon
GCACCGCGGCCGGTCCCCTGAGGAAGGGCAGAAGTCCCGCCGAAGGCACTCCCGCCGCTGCTCCAAGACCCTCTGCAAGGACAGCCCTGAGGCCCAGTCCAGTCGCCCGCCCAGTCAACCCCTCCAGATGCTTGGCTACCTGTCAGCCAGGGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139767-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTAGCCCAAAAAGCAAA
R:
AAGCATCTGGAGGGGTTGACT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)