RnoEX0086329 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78094667-78095945:+
Coord C1 exon
chr4:78094667-78094903
Coord A exon
chr4:78095655-78095783
Coord C2 exon
chr4:78095854-78095945
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGGACACTTCTCATCCATAGGTT
3' ss Score
7.47
5' ss Seq
GTGGTATGG
5' ss Score
5.61
Exon sequences
Seq C1 exon
CGTCCCCCTGCAGCCTCTCTGAGTTCCAGTGCAACAGTGGAGAATGCACCCCTCGGGGCTGGCGCTGTGACCGGGAGGAAGACTGCACAGACGGCAGTGACGAGCTTGATTGTGGTGGGCCCTGCAAGCTGTACCAGATGCCCTGTGCCCACGGCCCACACTGCCTGTCCCCAGGACAGCTATGTGATGGAGTGGCACAGTGCCCAGACGGTTCAGATGAGGACCCCGATGTTTGCG
Seq A exon
GTTCCACCCAGTTGCCCTCATGCCAAGGCCTCTTCTCCTGTGGTTTGGCTCCCTGGCTGTGCCTGAGTACCAAGCTGCTCTGTGATGGGATCCTTGACTGTCCCCAGGGCGAGGATGAGCTGGGCTGTG
Seq C2 exon
AGGAGCGATCAGCCTCAGGAGGCCCCAATGGGACAGCAGTTCCCTGTCCAGAGTTCTCCTGCCCAAATGGAACTTGCATCGATTTCTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=50.0)
A:
PF0005713=Ldl_recept_a=WD(100=86.4)
C2:
PF0005713=Ldl_recept_a=PU(40.0=51.6)
Main Inclusion Isoform:
ENSRNOT00000035906fB14389
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGTGGAGAATGCACC
R:
GGAACTGCTGTCCCATTGGG
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]