GgaEX6018003 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:324361-325071:+
Coord C1 exon
chr2:324361-324598
Coord A exon
chr2:324772-324894
Coord C2 exon
chr2:324980-325071
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGACACTGTCCCCACTGCAGGTT
3' ss Score
6.86
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCACCCGTGTGTGGACCCTACGAGTTCCCGTGCCGGAGTGGGCAGTGCGTGCCGCGGGGCTGGGTGTGCGACAGCGAGGCCGACTGCCCTGACAACAGCGACGAGCTGGGCTGCAACCGGAGCTGTGTGCTGGGACACTTCCCCTGCGCCCTGGGTGCCCACTGCATCCACTATGACCACCTCTGTGATGGCATCCCCCACTGCCCCGACCACTCCGATGAAAGTGATGACAACTGTG
Seq A exon
GTTCTACCCAGATCCCACCGTGCCCAGGGCATTTTGTCTGCAACAACCGTGTGTGTGTGAATGCAACCAGGGTGTGCGACGGGGCACTCGACTGCCCCCAGGGCGAGGATGAGCTGGCCTGCG
Seq C2 exon
AAGGCTACGTCCCCACTGGTGAGAGGAACCAGACTGTGGGTCCCTGTGCTGAGTACAGCTGCAGGGATGGCGACTGCATCACCTTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'13-17,'13-14,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=50.0),PF0005713=Ldl_recept_a=PU(6.8=3.8)
A:
PF0005713=Ldl_recept_a=PD(90.9=95.2)
C2:
PF0005713=Ldl_recept_a=PU(39.5=54.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGACCCTACGAGTTCC
R:
CTCTCACCAGTGGGGACGTAG
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]