HsaEX6011213 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149790283-149791706:+
Coord C1 exon
chr7:149790283-149790620
Coord A exon
chr7:149791019-149791202
Coord C2 exon
chr7:149791475-149791706
Length
184 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTGCCCCTCTGCAGGGA
3' ss Score
11.42
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
CGCCACCCTGCGGCCCCTTCGAGTTTCGGTGCGGCAGCGGCGAGTGCACCCCGCGGGGCTGGCGCTGCGACCAGGAGGAAGACTGCGCCGACGGCAGCGACGAGCGCGGCTGCGGAGGGCCCTGCGCGCCGCACCACGCGCCCTGCGCCCGCGGCCCTCACTGCGTGTCCCCCGAGCAGCTGTGCGACGGCGTGCGGCAGTGTCCCGACGGCTCGGACGAGGGCCCCGACGCCTGCGTTGAGGCTCCCGCGCCCCCGGCCATGCGCGGCCCCCCTGGCCAAGCCGGCGGGCCCACCTCTTCCCGAGCGCCATCCCCACCTTCGCCTCCTGAGGCACAG
Seq A exon
GGAGAGGGCAGGAAGGGACAGGAGCGGAGCAGGACACATCTCACAGTGCCCGCAGGCTCCACCCAGCTGCCTCTGTGCCCTGGCCTCTTTCCCTGTGGTGTGGCTCCGGGGCTGTGCCTGACCCCTGAGCAGCTCTGTGATGGGATCCCAGACTGTCCCCAGGGCGAGGACGAGCTGGACTGCG
Seq C2 exon
GTGTGTGATGGGCAGCCTGACTGTGGAAGGCCAGGGCAGGTGGGCCCCTCCCCAGAAGAGCAGGGTTGTGGGGCCTGGGGCCCCTGGAGCCCATGGGGGCCCTGCAGCCGGACGTGTGGGCCCTGGGGCCAGGGCCGGAGCCGCCGCTGCTCCCCACTCGGCCTCCTGGTGCTACAGAACTGCCCAGGGCCTGAGCACCAGTCTCAGGCCTGCTTCACGGCAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX4-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTTCGCCTCCTGA
R:
GTGAAGCAGGCCTGAGACTG
Band lengths:
243-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains