HsaEX6011212 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149790283-149791706:+
Coord C1 exon
chr7:149790283-149790620
Coord A exon
chr7:149791302-149791393
Coord C2 exon
chr7:149791475-149791706
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCTTCTTTCCCAGGGG
3' ss Score
11.81
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CGCCACCCTGCGGCCCCTTCGAGTTTCGGTGCGGCAGCGGCGAGTGCACCCCGCGGGGCTGGCGCTGCGACCAGGAGGAAGACTGCGCCGACGGCAGCGACGAGCGCGGCTGCGGAGGGCCCTGCGCGCCGCACCACGCGCCCTGCGCCCGCGGCCCTCACTGCGTGTCCCCCGAGCAGCTGTGCGACGGCGTGCGGCAGTGTCCCGACGGCTCGGACGAGGGCCCCGACGCCTGCGTTGAGGCTCCCGCGCCCCCGGCCATGCGCGGCCCCCCTGGCCAAGCCGGCGGGCCCACCTCTTCCCGAGCGCCATCCCCACCTTCGCCTCCTGAGGCACAG
Seq A exon
GGGGGCTGCCAGCCCTGGGAGGCCCCAACAGGACAGGGCTTCCCTGCCCAGAATACACCTGCCCCAATGGCACCTGCATAGGCTTCCAGCTG
Seq C2 exon
GTGTGTGATGGGCAGCCTGACTGTGGAAGGCCAGGGCAGGTGGGCCCCTCCCCAGAAGAGCAGGGTTGTGGGGCCTGGGGCCCCTGGAGCCCATGGGGGCCCTGCAGCCGGACGTGTGGGCCCTGGGGCCAGGGCCGGAGCCGCCGCTGCTCCCCACTCGGCCTCCTGGTGCTACAGAACTGCCCAGGGCCTGAGCACCAGTCTCAGGCCTGCTTCACGGCAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCCCGACGGCTCG
R:
CCTGGCCTTCCACAGTCAGG
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains