RnoEX6013504 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78094667-78096254:+
Coord C1 exon
chr4:78094667-78094903
Coord A exon
chr4:78095854-78095945
Coord C2 exon
chr4:78096023-78096254
Length
92 bp
Sequences
Splice sites
3' ss Seq
AACTGTTCTTTCTTCCCCAGAGG
3' ss Score
9.97
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CGTCCCCCTGCAGCCTCTCTGAGTTCCAGTGCAACAGTGGAGAATGCACCCCTCGGGGCTGGCGCTGTGACCGGGAGGAAGACTGCACAGACGGCAGTGACGAGCTTGATTGTGGTGGGCCCTGCAAGCTGTACCAGATGCCCTGTGCCCACGGCCCACACTGCCTGTCCCCAGGACAGCTATGTGATGGAGTGGCACAGTGCCCAGACGGTTCAGATGAGGACCCCGATGTTTGCG
Seq A exon
AGGAGCGATCAGCCTCAGGAGGCCCCAATGGGACAGCAGTTCCCTGTCCAGAGTTCTCCTGCCCAAATGGAACTTGCATCGATTTCTTGCTG
Seq C2 exon
GTTTGTGATGGGAGCCCAGACTGTGAATTGGCAGATGAAACAGAGCCCTCCTTGGATGAGCAGGGTTGTGGGACCTGGGGCTCCTGGGGTCCATGGGAGCCATGCAGTCAGACCTGTGGGCCTGGCATACAGAGTCGGAACCGAAACTGCTCCATATCCAGTCTCCATGTGCTACAGAACTGCCCAGGCCTGCAGCACCAGTCACAGTCCTGCTTCACAGAAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'29-34,'29-33,32-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.140 C2=0.009
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=50.0)
A:
PF0005713=Ldl_recept_a=PU(40.0=51.6)
C2:
PF0005713=Ldl_recept_a=PD(55.0=28.2),PF0009014=TSP_1=WD(100=65.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAAGCTGTACCAGATG
R:
GAGGGCTCTGTTTCATCTGCC
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]