BtaEX6029422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113452367-113454207:+
Coord C1 exon
chr4:113452367-113452603
Coord A exon
chr4:113453795-113453886
Coord C2 exon
chr4:113453976-113454207
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTCTTCTCTCAGAGA
3' ss Score
10.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGCTGCCCTGCGGCCCCTTGGACTTCGCGTGCGGCAGCGGCGAGTGCGCGCCCCGGGGCTGGCGCTGCGACGGCGAGGAGGACTGCGCCGACGGCAGCGACGAGAGCGGCTGCGACCGGCCCTGCGCGCCGCACCACGCGCCCTGCGCGCGCGGCTCGCACTGCGTGGCCGCGGAGCAGCTGTGCGACGGCGTCCCGCATTGCCCGGACGGCTCAGACGAGGACCCGGGCGCCTGCG
Seq A exon
AGAGGCTGCAGGCCCCAGGAGGCCCCAACCGGACAGGGCTTCCCTGCCCAGAATACTCCTGCCCGGATGGCCTCTGCATCGGTTTCCAGCAG
Seq C2 exon
GTGTGCGATGGGCAGCCCGACTGTGAGCTGGCGGGGACAGCAGGGCCCTCCCCAGAGGAGCAGGGCTGTGGGGCCTGGGGGCCCTGGAGCCCCTGGGAGCTGTGCAGCCGGACATGTGGGCCCGGGGTGCAGGGCCGGAGTCGCCGCTGCTCGCCCCCGAGCCTCCCGGTGCTGTGGCACTGCCCCGGCCCAGAGCGCCAGACTCGGGCCTGCTTCGCGGCCGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'41-41,'41-40,42-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.161 C2=0.051
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=50.0)
A:
PF0005713=Ldl_recept_a=PU(41.0=51.6)
C2:
PF0005713=Ldl_recept_a=PD(53.8=26.9),PF0009014=TSP_1=WD(100=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGCTCAGACGAGGAC
R:
CCACATGTCCGGCTGCAC
Band lengths:
151-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]