GgaEX6018002 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:418474-419183:+
Coord C1 exon
chr2:418474-418596
Coord A exon
chr2:418682-418773
Coord C2 exon
chr2:418946-419183
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTGTCTCTGATGCAGAAG
3' ss Score
8.78
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTCTACCCAGATCCCACCGTGCCCAGGGCATTTTGTCTGCAACAACCGTGTGTGTGTGAATGCAACCAGGGTGTGCGACGGGGCACTCGACTGCCCCCAGGGCGAGGATGAGCTGGCCTGCG
Seq A exon
AAGGCTACGTCCCCACTGGTGAGAGGAACCAGACTGTGGGTCCCTGTGCTGAGTACAGCTGCAGGGATGGCGACTGCATCACCTTCAAGCAG
Seq C2 exon
GTGTGCAATGGGCTGCCCGACTGCAGGGACGGGGACATGGCCTCAGGGTGGCTGCCCTCAGATGAGTGGGACTGCGGGCAGTGGGGCCCCTGGGCACCCTGGGGGATCTGCAGCCACTCCTGTGGCCTTGGCCAGCAGCTGCGGGCACGGGAGTGCAGCCAGAGAACCCCAGGTGTGCTGCACCAGTGCCACGGTGAGGCCACGCAGGCAAGGCCCTGCTTCAGCACTGCCTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(90.9=95.2)
A:
PF0005713=Ldl_recept_a=PU(39.5=54.8)
C2:
PF0005713=Ldl_recept_a=PD(55.8=30.0),PF0009014=TSP_1=WD(100=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCATTTTGTCTGCAAC
R:
AGTCCCACTCATCTGAGGGC
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]