MmuEX6004242 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48462113-48463707:+
Coord C1 exon
chr6:48462113-48462349
Coord A exon
chr6:48463307-48463398
Coord C2 exon
chr6:48463476-48463707
Length
92 bp
Sequences
Splice sites
3' ss Seq
AACTGTTCTTTCTTCCCCAGAGG
3' ss Score
9.97
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CGTCGCCCTGCAGCCTCTTGGAGTTCCAGTGCAACAGTGGAGAATGCACCCCTCGGGGCTGGCGCTGCGACCAGGAGGAAGACTGCACCGACGGCAGCGATGAGCTTGACTGCGGTGGGCCCTGCATGCTGTACCAGGTGCCCTGTGCCCACAGCCCACACTGCGTGTCCCCAGGACAGCTATGTGATGGAGTGACACAGTGCCCTGATGGTTCAGATGAGGACCCCGATGTTTGCG
Seq A exon
AGGAGCAATCAGCCTCAGGAGGCGCTAACAGGACAGGGGCTCCCTGTCCAGAATTCTCCTGCCCTGATGGCACTTGCATTGATTTCCTGCTG
Seq C2 exon
GTTTGTGATGGGAACCCAGACTGTGAATTGGCAGACGAAACAGAGCCCTCCCTGGACGAGCAGGGTTGTGGGGCCTGGGGCTCCTGGGGTCCATGGGCGCCATGCAGTCAGACCTGTGGGTCTGGCACACGGAGTCGGAACCGGAACTGCTCCACATCCAGTCTCCAGGTGCTACAGAACTGCCCGGGCCTGCAGCACCAGTCACAGGCCTGCTTCACAGAAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'23-43,'23-32,34-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.161 C2=0.013
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=50.0)
A:
PF0005713=Ldl_recept_a=PU(42.9=58.1)
C2:
PF0005713=Ldl_recept_a=PD(52.4=28.2),PF0009014=TSP_1=WD(100=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACACAGTGCCCTGATG
R:
ACCCACAGGTCTGACTGCAT
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types