GgaEX6018003 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:418064-418773:+
Coord C1 exon
chr2:418064-418300
Coord A exon
chr2:418474-418596
Coord C2 exon
chr2:418682-418773
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGACACTGTCCCCACTGCAGGTT
3' ss Score
6.86
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
CACCCGTGTGTGGACCCTACGAGTTCCCGTGCCGGAGTGGGCAGTGCGTGCCGCGGGGCTGGGTGTGCGACAGCGAGGCCGACTGCCCTGACAACAGCGACGAGCTGGGCTGCAACCGGAGCTGTGTGCTGGGACACTTCCCCTGCGCCCTGGGTGCCCACTGCATCCACTATGACCACCTCTGTGATGGCATCCCCCACTGCCCCGACCACTCCGATGAAAGTGATGACAACTGTG
Seq A exon
GTTCTACCCAGATCCCACCGTGCCCAGGGCATTTTGTCTGCAACAACCGTGTGTGTGTGAATGCAACCAGGGTGTGCGACGGGGCACTCGACTGCCCCCAGGGCGAGGATGAGCTGGCCTGCG
Seq C2 exon
AAGGCTACGTCCCCACTGGTGAGAGGAACCAGACTGTGGGTCCCTGTGCTGAGTACAGCTGCAGGGATGGCGACTGCATCACCTTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=50.0),PF0005713=Ldl_recept_a=PU(6.8=3.8)
A:
PF0005713=Ldl_recept_a=PD(90.9=95.2)
C2:
PF0005713=Ldl_recept_a=PU(39.5=54.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGACCCTACGAGTTCC
R:
CTCTCACCAGTGGGGACGTAG
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]