HsaEX6011213 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149487371-149488481:+
Coord C1 exon
chr7:149487371-149487708
Coord A exon
chr7:149488107-149488290
Coord C2 exon
chr7:149488390-149488481
Length
184 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTGCCCCTCTGCAGGGA
3' ss Score
11.42
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
CGCCACCCTGCGGCCCCTTCGAGTTTCGGTGCGGCAGCGGCGAGTGCACCCCGCGGGGCTGGCGCTGCGACCAGGAGGAAGACTGCGCCGACGGCAGCGACGAGCGCGGCTGCGGAGGGCCCTGCGCGCCGCACCACGCGCCCTGCGCCCGCGGCCCTCACTGCGTGTCCCCCGAGCAGCTGTGCGACGGCGTGCGGCAGTGTCCCGACGGCTCGGACGAGGGCCCCGACGCCTGCGTTGAGGCTCCCGCGCCCCCGGCCATGCGCGGCCCCCCTGGCCAAGCCGGCGGGCCCACCTCTTCCCGAGCGCCATCCCCACCTTCGCCTCCTGAGGCACAG
Seq A exon
GGAGAGGGCAGGAAGGGACAGGAGCGGAGCAGGACACATCTCACAGTGCCCGCAGGCTCCACCCAGCTGCCTCTGTGCCCTGGCCTCTTTCCCTGTGGTGTGGCTCCGGGGCTGTGCCTGACCCCTGAGCAGCTCTGTGATGGGATCCCAGACTGTCCCCAGGGCGAGGACGAGCTGGACTGCG
Seq C2 exon
GGGGGCTGCCAGCCCTGGGAGGCCCCAACAGGACAGGGCTTCCCTGCCCAGAATACACCTGCCCCAATGGCACCTGCATAGGCTTCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'38-38,'38-37,39-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=0.419 C2=0.196
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCACTGCGTGTCCCC
R:
GTGTATTCTGGGCAGGGAAGC
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)