RnoEX0088528 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45880669-45887681:+
Coord C1 exon
chr3:45880669-45880791
Coord A exon
chr3:45882677-45883634
Coord C2 exon
chr3:45887445-45887681
Length
958 bp
Sequences
Splice sites
3' ss Seq
TTCCCGTTTTGTCTTTGTAGGTC
3' ss Score
11.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCCTCAGTAAGAAGACTGGAGTCTCCTCAAGCCATCTGCAGGCCCTGTGGATTGGCTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCCTCTCTCAGGAATCTCTACACTCCCAATGTAAAG
Seq A exon
GTCTTTGATGAGGGGGAAAACGGCTTTCACAGAATATTGAACAAATTACAGTAATTTAAAATTATGCATGCAATTAAGGAACTGTTTTTAGACAGTATTAACTGTTGCCATACAGGAATGAATGTCATTTTGGAAATAATTGCAGTTTGCCACTTTGGCAAATTAAAATGACTTGCTCCGAAATGAGGGCTCGGTAATCTCGGCAGCATGCTGGTGACGGCTAGCCCTGTGGCCTCCGTGACTGGGCCAGGGTCATGCCAGCCTGTGCCTGAGTGGCCCACTGGGATCCTTGCCACTCCAGCCTCTGGGCTCCTGCCCAGCTGATTGTTTCCTCAAGTGTTGTCATCGGGCAGGTGCCAGCCCCTGCCCTGTAGGTTTGGGAGCATTTGGCTTCTGGGGTTTTGCTCAGCTAAGAGGAGAAGAGACCAGGTATGAGACAGCGACATGGCCTGACTTTCTTAGGCCGGGCTCAAGAAGATTGTACTTCGAGTCGCAATCAAGGAAGATAGACTTTTCAATGGCCCTGCTTCTGTAAGCCTCCAGTATCCTGGTTCCCAGCTTGAGGTAGCTGGCACTTCTCCAGGTCCTCACTGTCATTGACGACCCACTATCCTTCTGTGTTTCATAAGTTGCTCAGCAGCCTTGCCACTTCCAAGTGTTAGCCAAAGAGAGCTGTGGTGAAGACGGTGAAGTCTGTGGATGGGCAGGAATGTGTGGGACGAGTCATCTTGTCCCTTCCTGTAGACCACACAGTATCTGCTACAACCCTGCTGTGCTGTGTCCCTGCTGCTCCAGAGACAGCATTAGCTTTGAGTCCTGAGCTATCTTTGCCCTACCCGCTCAGAGCCTCTGAGTCCTCACCTCTGAAATGGAGACAACAAAACCTCCATCTCCCAGGGATCAGAAGGGTGGCAGCGAAAGCTCTCGGGAAAGTGCCTGGCATGTCTTGTGTGCCCAG
Seq C2 exon
GTGAGCCGGCTCCTGATCTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAACGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAGGAAGTTGTCACGCTCCTGCTGGAATTTGGCGCCTGCCTGGACGGGATGTCGGAGAATGGAATGAACGCACTGTGTTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTGACCAAGAAGGGGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'53-29,'53-28,54-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(59.3=68.4)
Main Inclusion Isoform:
ENSRNOT00000038983fB14750
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGAGTCTCCTCAAGCCA
R:
CTTGCCCCCTTCTTGGTCAG
Band lengths:
345-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]