RnoEX0088529 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45880669-45889932:+
Coord C1 exon
chr3:45880669-45880791
Coord A exon
chr3:45887445-45887681
Coord C2 exon
chr3:45889747-45889932
Length
237 bp
Sequences
Splice sites
3' ss Seq
GGGGGGACATTGCCCAACAGGTG
3' ss Score
4.23
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGCCTCAGTAAGAAGACTGGAGTCTCCTCAAGCCATCTGCAGGCCCTGTGGATTGGCTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCCTCTCTCAGGAATCTCTACACTCCCAATGTAAAG
Seq A exon
GTGAGCCGGCTCCTGATCTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAACGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAGGAAGTTGTCACGCTCCTGCTGGAATTTGGCGCCTGCCTGGACGGGATGTCGGAGAATGGAATGAACGCACTGTGTTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTGACCAAGAAGGGGGCAAGG
Seq C2 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCGCTGAGGGGCCACAGTGACATTCTCCAGTACCTACTGAACTGTGAGTGGTCGGCAGGCCCTCCGCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCAGCCGCCAGCATGGGCCACAGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'53-30,'53-29,56-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(59.3=68.4)
C2:
PF127962=Ank_2=PD(38.5=56.5),PF136371=Ank_4=PU(21.1=19.4)
Main Skipping Isoform:
ENSRNOT00000038983fB14750
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCAGTAAGAAGACTGGAG
R:
CTGGCGGCTGCTGTCAGT
Band lengths:
293-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]