DreEX0077224 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11824642-11831336:-
Coord C1 exon
chr6:11831214-11831336
Coord A exon
chr6:11826703-11826939
Coord C2 exon
chr6:11824642-11824806
Length
237 bp
Sequences
Splice sites
3' ss Seq
CTCTGGTCTGGTCTCTCCAGGTG
3' ss Score
10.1
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GGCCACAGTAAGAGAACAGGGGTTTCGTCGAGCGTTCTGCAGCCGTTGTGGATCAGCTACAGCACAGACAGCCTCTCCGCAGCTCTTTCCTCCCTCAGAAACCTCTACACACCCAATGTCAAG
Seq A exon
GTGTCCCGCTTGCTGATCTTGGGAGGGGCGAGTGTTTGTTACCGCACTGAGGTGTTGAACAGTGCACCGGTGCTGTGTGTACAGTCTCATCTGGGCCACCTGGAGATGGCAGCTTTGCTCCTGGAGAGCGGGGCTCCTGTGGACGGGCAGTCAGAAAACGGCATGACCTCCCTCTGCTACGCCTCAGCTGCTGGACATCTGCCGCTTGTCACTTTACTCTGCAAAAAGGGGGCAAAG
Seq C2 exon
GTGGATCATGCAGATAAGAGTGGTCAGTGTGCACTGGTTCACGCTGCTCTGCGGGGTCATGCTGAGATCCTGCAGTATCTTCTGGAGCAGGACTGGAGCTCAGACCTGAAGAACAAGGCACTGCAGCAGGCACTAATTGCAGCCTCCAGCATGGGACACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(56.8=68.4)
C2:
PF127962=Ank_2=PD(41.1=70.9),PF136371=Ank_4=PU(28.1=32.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGTAAGAGAACAGGGG
R:
GTGTGTGTCCCATGCTGGAG
Band lengths:
285-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]