MmuEX0046242 @ mm9
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59645624-59671326:+
Coord C1 exon
chr2:59645624-59645746
Coord A exon
chr2:59653375-59653611
Coord C2 exon
chr2:59671193-59671326
Length
237 bp
Sequences
Splice sites
3' ss Seq
GGGGGAACATTGCCCAACAGGTG
3' ss Score
3.24
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGCCTCAGTAAGAAGACTGGAGTCTCCTCAAGCCATCTGCAGGCTCTGTGGATCGGTTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCCTCTCTCAGGAATCTCTATACTCCCAACGTGAAG
Seq A exon
GTGAGCCGGCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAATGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAAGAAGTTGTCACTCTCCTTCTGGAATTTGGCGCCTGCCTGGATGGGATGTCGGAGAACGGTATGAACGCACTGTGCTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTCATCAAGAAGGGGGCAAGG
Seq C2 exon
CCCTGACGGCCGCTGCTGGGAGAGGAAAGGTGGAGATCTGCGAGCTGCTGCTGGAGCGTGGAGCTGCCGTGTCTCGGGCCAACAGGAGAGGGGTTCCCCCTCTGTTTTGTGCCGCCCGCCAAGGCCATTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168_MULTIEX1-16/25=15-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(58.5=69.6)
C2:
PF136371=Ank_4=PD(29.8=37.8),PF127962=Ank_2=PU(10.8=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCAGTAAGAAGACTGGAG
R:
GGCACAAAACAGAGGGGGAAC
Band lengths:
236-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: