MmuEX0046242 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59807567-59817670:+
Coord C1 exon
chr2:59807567-59807689
Coord A exon
chr2:59815318-59815554
Coord C2 exon
chr2:59817485-59817670
Length
237 bp
Sequences
Splice sites
3' ss Seq
GGGGGAACATTGCCCAACAGGTG
3' ss Score
3.24
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGCCTCAGTAAGAAGACTGGAGTCTCCTCAAGCCATCTGCAGGCTCTGTGGATCGGTTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCCTCTCTCAGGAATCTCTATACTCCCAACGTGAAG
Seq A exon
GTGAGCCGGCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAACAATGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAAGAAGTTGTCACTCTCCTTCTGGAATTTGGCGCCTGCCTGGATGGGATGTCGGAGAACGGTATGAACGCACTGTGCTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTCATCAAGAAGGGGGCAAGG
Seq C2 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAACTGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'74-57,'74-51,77-57=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(58.5=69.6)
C2:
PF127962=Ank_2=PD(39.4=59.7),PF136371=Ank_4=PU(21.1=19.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGAGTCTCCTCAAGCCA
R:
GAGCTGTGGCCCATGCTG
Band lengths:
294-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types