GgaEX1057146 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38149253-38151731:+
Coord C1 exon
chr7:38149253-38149375
Coord A exon
chr7:38150266-38150502
Coord C2 exon
chr7:38151546-38151731
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTATTTAAATTAAATTTTAGGTG
3' ss Score
8.95
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTCTCAGTAAAAGGACTGGAATTTCTTCCAGTCATCTTCAAGCCTTGTGGATTGGTTATAGTGCTGATGGACTGTCTGCAGCCCTTGCTTCTCTGAGAAACATCTATACACCCAATGTGAAG
Seq A exon
GTGAGTCGACTGCTGATCTTGGCAGGTGCAAATGTGAATTACAAGACCGAAGTACTAAATAATGCTCCAGTACTGTGTGTTCAGTCACACCTTGGACATGAAGAAGTGGTCACTCTTCTACTAGAATACGGAGCTGCTATTGATGGAACATCAGAAAATGGAATGACCCCACTTTGTTATGCAGCAGCTGCAGGTCACATGAACATAGTTTCACTGCTGTGCAAAAAGGGTGCAAAG
Seq C2 exon
GCTGACTATCTAGACAAAAAAGGGCAATGTGCTTTGGTCCACAGTGCACTGAGAGGGCATTGTGATATCCTTGAATATCTTCTGAATGTCGCTTGGGCAGCTTCTTCTCAGGAGCAAAATTCACTAAGAAAAAGCCAAGCACTGCAGCAATCACTGACAGCAGCTTCCAGTATGGGACACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.6=17.1)
A:
PF127962=Ank_2=FE(84.8=100)
C2:
PF127962=Ank_2=PD(4.3=6.5),PF127962=Ank_2=PU(47.6=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCAGTAAAAGGACTGGAA
R:
GTGTCCCATACTGGAAGCTGC
Band lengths:
303-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]