HsaEX6016141 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159185791-159232659:+
Coord C1 exon
chr2:159185791-159185899
Coord A exon
chr2:159194257-159194493
Coord C2 exon
chr2:159231058-159232659
Length
237 bp
Sequences
Splice sites
3' ss Seq
TGGGGGGCCTTGTCCAACAGGTG
3' ss Score
7.55
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GAACGGGCACGCGCTCTTGGCATTCATGTTCTCGCGTCAGGAGGGCAAGTTGAACCGCCAGCAGACCATGGAGCTTGGCCACCACATCCTGAAGGCGCACATTTTCAAG
Seq A exon
GTGAGCCGTCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAATAATGCCCCAATCCTGTGCGTCCAGTCTCACCTTGGCCACGAGGAAGTTGTCACTCTGCTCCTGGAATTTGGTGCCTGCCTGGACGGAACGTCAGAGAACGGCATGACTGCCCTCTGTTACGCAGCAGCTGCTGGCCACATGAAGCTGGTGTGTCTGCTGACCAAGAAGGGAGTGAGA
Seq C2 exon
TCCTGGTGGTAAATTAAATAGTTTTTTTCATCAGAAAAATTATTTTTTAGCCATTTTTTTTCTTTGGGGTGGATCTGATGCCATTGATATATCTAAAATGTGGGATAAAACTTCTTTAATAGCTAGAAATCACCATAAATAAGAATGCTAAACAGAATTGAAAATTATATCAACTTAAAATTTTAAGACAGCCCAGAAGACATTAATGACTCTCACTTATGAAATTGTTTGGCTTTTGCCACTTTCTTCCTTGCCTTTGCTATATGGTAGAATCACAGAACTTACTTAGAGAATAAATATGTCTATTGTTCAAGAGTAACAGGTTTAACTCATGACCAAGTGATGTACATCCAAGTGATGTATTCTGGAAACGATGGAATTTTACAGTTACAGTTCCATTGAGTCAAATCCCATTTTATATATACATAAAAATTAAGTTCTGAGTGAGTTCTAGCTAAATATAAGTGCGACTGTAAACGCAGCCAATTTTTTTAAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX2-2/13=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(58.1=63.3)
C2:
PF134281=TPR_14=PD(65.9=6.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCACCACATCCTGAAG
R:
AGGCAAGGAAGAAAGTGGCAA
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains