HsaEX6016141 @ hg19
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160043413-160053304:+
Coord C1 exon
chr2:160043413-160043535
Coord A exon
chr2:160050768-160051004
Coord C2 exon
chr2:160053119-160053304
Length
237 bp
Sequences
Splice sites
3' ss Seq
TGGGGGGCCTTGTCCAACAGGTG
3' ss Score
7.55
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GGCCTCAGTAAGAAGACGGGAATTTCTTCAAGCCATCTCCAAGCCCTGTGGATCGGCTACAGCACCGAGGGGCTGTCCGCCGCCCTGGCCTCTCTCAGGAATCTCTATACTCCCAACGTGAAG
Seq A exon
GTGAGCCGTCTCCTGATTTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAATAATGCCCCAATCCTGTGCGTCCAGTCTCACCTTGGCCACGAGGAAGTTGTCACTCTGCTCCTGGAATTTGGTGCCTGCCTGGACGGAACGTCAGAGAACGGCATGACTGCCCTCTGTTACGCAGCAGCTGCTGGCCACATGAAGCTGGTGTGTCTGCTGACCAAGAAGGGAGTGAGA
Seq C2 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCGCTTGTCCACAGTGCCCTACGGGGCCACGGTGACATTCTCCAGTACCTGCTGACTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAGAGCCACGCCCTGCAGCAGGCGCTGACCGCGGCGGCCAGCATGGGCCACAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'23-25,'23-23,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(6.6=14.6)
A:
PF127962=Ank_2=PU(55.1=68.4)
C2:
PF127962=Ank_2=PD(4.4=6.5),PF127962=Ank_2=PU(47.6=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCAGTAAGAAGACGGGA
R:
GAGCTGTGGCCCATGCTG
Band lengths:
308-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)