BtaEX6009659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37267394-37279823:-
Coord C1 exon
chr2:37279701-37279823
Coord A exon
chr2:37269367-37269603
Coord C2 exon
chr2:37267394-37267579
Length
237 bp
Sequences
Splice sites
3' ss Seq
TGGGGGACATTCTCCAACAGGTG
3' ss Score
6.75
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGCCTCAGCAAGAAGACAGGAATCTCTTCAAGCCACCTCCAGGCCCTGTGGATCGGGTACAGCACCGAGGGGCTGTCCGCGGCCCTGGCCTCTCTCAGGAATCTCTACACCCCCAATGTGAAG
Seq A exon
GTGAGCCGTCTCCTGATTTTAGGAGGGGCCAACGTGAACTACAGGACCGAAGTGTTAAATAACGCCCCGATCCTGTGCGTCCAGTCTCACCTCGGCCACGAGGAAGTGGTCACTCTGCTTCTGGAATTCGGCGCCTGCCTGGATGGCATGTCGGAGAACGGCATGACTGCCCTCTGCTACGCGGCCGCTGCAGGTCACATGAAGCTGGTGTGTCTGCTGGCCAAGAAGGGGGCGAGG
Seq C2 exon
GTGGACCACTTGGATAAGAAAGGCCAGTGCGCGCTGGTCCACAGCGCACTGAGGGGCCACGGCGACGTTCTCCGCTACCTCCTGACCTGCGAGTGGTCGTTGGGCCCGCCCCAGCCCGGCGCGCTGAGGAAGAGCCAAGCTTTGCAGCAGGCACTGACGGCGGCTGCCAGCATGGGCCACGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'31-36,'31-34,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(59.3=68.4)
C2:
PF127962=Ank_2=PD(38.5=56.5),PF136371=Ank_4=PU(22.4=21.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAGCAAGAAGACAGGAA
R:
TGCAAAGCTTGGCTCTTCCTC
Band lengths:
268-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]