RnoEX0092227 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79839333-79843937:-
Coord C1 exon
chr5:79843822-79843937
Coord A exon
chr5:79842977-79843133
Coord C2 exon
chr5:79839333-79839602
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCCCATCTTACAGAAC
3' ss Score
11.14
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACTTGCCTGCACCTGAAGGCCTAAAATTCAAGTCTATCAAGGAGACATCTGTGGAAGTAGAGTGGGATCCTCTGGACATCGCTTTTGAAACGTGGGAGATCATTTTCAGAAATATG
Seq A exon
AACAAAGAAGATGAGGGAGAGATCACAAAAAGCTTGAGGAGGCCAGAGACCTCCTACCGCCAAACTGGCCTGGCTCCTGGCCAAGAATATGAAATATCTCTTCACATTGTGAAAAACAACACCCGAGGCCCTGGCTTGAAGAAAGTGACCACAACTC
Seq C2 exon
GCCTGGATGCCCCCAGCCAAATTGAGGTGAGAGACATCACAGACACTACAGCACTGATCACCTGGTCCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAGGATGTGCCTGGAGACCGGACCACCATCGACCTCACACATGAAGACAACCAGTACTCCATCGGGAACCTGAAACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAGGAGACCTTCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'8-15,'8-11,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.509 C2=0.363
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(43.9=92.3)
A:
PF0004116=fn3=PD(53.7=83.0)
C2:
PF0004116=fn3=WD(100=89.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGATCCTCTGGACATCG
R:
CAGGTTTCAGGTTCCCGATGG
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]