DreEX0080088 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27995300-28001322:-
Coord C1 exon
chr5:28001207-28001322
Coord A exon
chr5:28000392-28000545
Coord C2 exon
chr5:27995300-27995569
Length
154 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTTTGAATGGCAGAAA
3' ss Score
5
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATCTTCCTGAACCTGAGGGCCTGAAATTCAAATCCGTGAAAGAGACTTCAGTGGAGGTTGAGTGGGACCCCTTGAACATCCCGTTTGATGGCTGGAATCTGATCTTCAGAAACACA
Seq A exon
AAAGAAGAAGATGGAGAGATTTTGAACTCTCTCGCTCCTCCTGAGACCACCTTTGAGCAGTCTGGACTTGGACCTGGACAAGAGTATGAAGTTAAGCTTGAAGTCGTAAAGAACAACACCCGTGGACCCCCAGCCAGCAAGAACGTTGTCACAA
Seq C2 exon
TGATTGATGCTCCTAGCCAGGTGGATGTGCGTGACGTGACGGACACAACAGCCCTGGTCACGTGGCTTCAGCCTGTCGCTCAGGTGGACGGCATCTCTGTTTCCTATGGCCCAAACACAGACTCCTCCGACAGGAACACAATCGAGCTTTCCTCCATAGAAACCCAGTACCATCTGGCTGAGCTGTCTCCTGACACTGAGTATGAGGTCTCTCTTATGGCCCGCCGGGGAGAGATGAGCAGCTTCCCCATCTATGAGACCTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'5-10,'5-7,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.769 C2=0.363
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(43.9=92.3)
A:
PF0004116=fn3=PD(53.7=84.6)
C2:
PF0004116=fn3=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGGGACCCCTTGAACAT
R:
ACAGCTCAGCCAGATGGTACT
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]