GgaEX1059496 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2675810-2677050:-
Coord C1 exon
chr17:2676935-2677050
Coord A exon
chr17:2676676-2676835
Coord C2 exon
chr17:2675810-2676079
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACTGATTGTTCCATATGTAGCAG
3' ss Score
4.9
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATTTGCCTGCTCCAGAAGGTCTGAAATTCAAATCTGTTAGAGAAACGTCTGTCCAGGTGGAATGGGATCCTCTGAGCATTTCCTTTGATGGCTGGGAGCTGGTCTTTCGTAATATG
Seq A exon
CAGAAAAAGGATGATAATGGAGACATAACCAGCAGCTTGAAAAGGCCGGAGACATCATATATGCAGCCAGGATTGGCACCAGGACAACAGTATAATGTATCCCTTCATATAGTGAAAAACAATACCAGAGGACCAGGGCTATCCCGAGTGATAACCACAA
Seq C2 exon
AACTCGATGCCCCTAGCCAGATTGAAGCGAAAGATGTCACAGACACCACAGCTCTGATCACATGGTCCAAACCCTTGGCTGAAATTGAAGGCATAGAGCTCACATATGGCCCCAAGGATGTTCCAGGGGACAGGACTACCATTGACCTCTCTGAGGATGAAAACCAATATTCTATTGGAAACCTGAGGCCACACACAGAATATGAAGTGATACTCATTTCTCGGCGAGGGGACATGGAGAGTGACCCTGCAAAAGAAGTCTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'10-8,'10-6,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.519 C2=0.495
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(43.4=92.3)
A:
PF0004116=fn3=PD(54.2=83.3)
C2:
PF0004116=fn3=WD(100=90.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGGAATGGGATCCTCT
R:
GTGTGGCCTCAGGTTTCCAAT
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]