RnoEX0095808 @ rn6
Exon Skipping
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189106039-189108699:+
Coord C1 exon
chr2:189106039-189106454
Coord A exon
chr2:189107717-189107827
Coord C2 exon
chr2:189108595-189108699
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGGTACTGTTTTTCCTGCAGCAC
3' ss Score
9.93
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
CAGGAAGTGCGGACCGCGGCGGCGGCGGAGCCCGGAGCGGAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAACTGGGGGTCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCGGGAGGGGGCCCGGGGCCAGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCCGGAGCCGGAGGGGCCGGGGCCGGGGCTGCGCCCGGACCCCATCTCCCCTCCCGGGGGTCGGTGCCGGGGGACCCCGTCCGCATCCACTGCAACATCACG
Seq A exon
CACTGGTTAGAACTATGGCATCGCTAAGATCCCCAGTAGAAGTGGGTAAGGCTTCCTTGGCATGTGTTGAAACATCAAAGATTGGATTTTGCTAAGTGGATTCACTTACGG
Seq C2 exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGATCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(55.6=63.3)
A:
NO
C2:
PF0577317=RWD=FE(27.4=100)
Main Inclusion Isoform:
ENSRNOT00000028210fB15988
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCTGCTCGAGTCCATC
R:
TCATCAGACTCCACCGACCAG
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]