RnoINT0159275 @ rn6
Intron Retention
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189106039-189108699:+
Coord C1 exon
chr2:189106039-189106454
Coord A exon
chr2:189106455-189108594
Coord C2 exon
chr2:189108595-189108699
Length
2140 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CTCCCTGCTTTCCCCCTCAGGAA
3' ss Score
12.15
Exon sequences
Seq C1 exon
CAGGAAGTGCGGACCGCGGCGGCGGCGGAGCCCGGAGCGGAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAACTGGGGGTCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCGGGAGGGGGCCCGGGGCCAGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCCGGAGCCGGAGGGGCCGGGGCCGGGGCTGCGCCCGGACCCCATCTCCCCTCCCGGGGGTCGGTGCCGGGGGACCCCGTCCGCATCCACTGCAACATCACG
Seq A exon
GTGAGGACCTCGCTTGCGCCACGCTGGGGGTCCCTTGTCTGGTGCTCGAAATCACACCATACAACCTCCTGCTCTCGAAGGACCCGGAGGCCGGAGCTCCCTCTTGGTGCTTGGCTCCTTCTCTCCAAGGCTACACTTGTTTCTTCAGCTTGAGGTTCTGTGGTGCAGTCACAGTCTTTGCTGTTGACCCCTGAGAGCGAGGGACACCGGGACATGTGGCCCCTCAACCACATCTTCCTATGAATCCACCCACACCTCAGGTTTTGGCTCCTTCTGCTTACTCCTCCACAACTTCACCATGTCACCTAGAAATGCCCATTTCTTCTCCCCACCCCAACTCTAATAAGATTCCAGGCCTCTGCTGGAAGGACCTAGTCTGGAACTCAGCCCAGTTCCATAGTGACCCTTCTCAGTAGTTCTTTCCGCTTAGATGTTACCACCTGTGGGCTCCCTGCGCAAGCATCCCTCGTGCAACCCCTTTGCTCCCTGAATTTCACCAAGTAGTAGTGCCGTTCATTGACTCCACGTTGGATTTCCTCTTCCTTACTCTGGTGTAACTAACCTTTAACTCCTCTTTTTGCCTTGGCTGGTAGCAACTTTGGCACTTCCCTCCCCATTCCTAGGATCATGTCTGCTTATCCTTGGTGATTGTTGCCTTTTCTGGTGGTGATAGCAGTGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAGCAGTAACAGTGTCATTCTCCCCAGTAGGCATCATTCCATCCTAACTATACTAGATTAGGAAGCACCTTACATGTGTCCTGCCTTATTTTATCCCCTAGTGTCCCTTGAGGAAATTGTTGGGTGTAATGTTTTAACAGCTGGTACTGTGTGATCTAGTGCTCATGTTGTTCGGTAACACCCACTGTAATGATCTTGTCCCTCCTAGAGCTAGCCAGAGAGCTAGTGGGCAGCTAGCTCTCCACACTAGAAATGGGAGTTGCCTGGGGGGGGAAGACAGACTTGTGAGTTTTGTGGTTCTTGGAAGCTTCAATTCATTTTTCATGGTGTTTTCTAGCCCTTTCTGCCACCAAACCAGGTCGTGGTTTGGTGAGGTAACTTTGGGAGTGGAGTAATAATGAGATACTTGAGTTTTGATGGGGACTCATCTATCCAAGCTGAGGCTTACCTCACCAAGCTATGACCACCAGGAGTGGCTCAGTCAAGTAAAGATTTTAGCATCTTTGGTACTGTTTTTCCTGCAGCACTGGTTAGAACTATGGCATCGCTAAGATCCCCAGTAGAAGTGGGTAAGGCTTCCTTGGCATGTGTTGAAACATCAAAGATTGGATTTTGCTAAGTGGATTCACTTACGGGTAGGTCTGCTTCCTCCAGCTGCTTCCTTTCAGTTGCCAGAGGCCGTCTACTCTCTTTGTCTTTGGGGGTTCTCAGCTGCAGTGCCCATGGCCCCTCTAAAAGAAACTTGGCCTACACTGGCCCCCTTGCCTTGGGCAGAGGAGGGGAGTCTGGTGAGGCTCCTTTGGCATGGTGGCTCAGGAATGCTGGGAATGTCAGTAGCGTAGGCTTTTTTCTCCCAGCCCATGCCTGGACTCAGGATGAGGGCAGGTTCCTGAGGGAGTGGTAGGGAGAATGGGTCTTAGGGGGGCTCTGGGCTGGGGGTGGATCTTGCAAATGCCCTTTTACTATTAGCTTTGGAAACAGTTTTATTTTAGTTCCTCCTCCCCTGGTGGCTACAAGCCTGCATTTTTCTCATCAATGTGACTGTTATGAGGTGATCTTCCCTCCCCTGATTCTGGAGTTTGGAAACACTGAAGGACTCTGGCCTGGGTGTGGGAAGAACTCAGAGTGTGGCAGGCAGTCAGGACAGTAGAGCCAGAGCTTCCTTTACTGTCATGAGCTTGCCCTGGTTTTTATCTGGGAGGGAGAGAGTCCACAGGATGCTTCTTGGGTATGGCCCTTCCAGGCTATTTGTCTAGGGAAGCTGAGCTAGTATTTATGACCGTAGGGCATGGTGGTGGGAAAGAAAAGAACCAGAAGTCTTCAGAGAAGAAGGAAGGCTAGGCAAAAACTGGTTTCTCTTAAAGTTTCTCATTGTGACCACTCTCCCTGCTTTCCCCCTCAG
Seq C2 exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGATCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791:ENSRNOT00000028210:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(55.6=63.3)
A:
NA
C2:
PF0577317=RWD=FE(27.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]