HsaINT0176406 @ hg38
Intron Retention
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:HGNC Symbol;Acc:HGNC:15698]
Coordinates
chr1:154555860-154558633:-
Coord C1 exon
chr1:154558227-154558633
Coord A exon
chr1:154555965-154558226
Coord C2 exon
chr1:154555860-154555964
Length
2262 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TATTGCTCTTTTCCCTTCAGGAG
3' ss Score
11.11
Exon sequences
Seq C1 exon
GCGGCGGCGGCGGCGGCGGAGCCCGGAGCGCAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAGCTGGGGGGCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCAGGGGGGGGCCCGGGGCCGGGGCCCTGCCTGAGGCGAGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGGACCGCATCTCCCCCCACGGGGGTCGGTGCCTGGGGATCCTGTCCGCATCCACTGCAACATCACG
Seq A exon
GTGAGGACCCCCTCGCGTGCGCCTCTGTGGGGGCCCCTTGTCAGGGACCCAGGATCACTCCATCCAGCTTTTTGCTCTCGAAGGACCTGGGAGGCCGAAGCCCCTCTCAGGGCTCAGTTCTTTCTCTCCAGGTTACATTTGTTTCTGCTGCTTGAGGTTATGCAGTGCACCCAGAATCTCTACCATTGACCCCAATAGCAAGGGACACCCCGACATATGGCGCCTAGACTACCCGTTTCCACGAACCCACCCACATCCCAAGGTTCATGATTTTGGCTCTTTTTGGCTACTCCTCCACAACTTTACCTTGCCACCTAGGAATGCGTCTTTCTTCCCCTTACTCTTATTTCAAGGTTTTAGGCCTCGGCACTGACCCTAACTGCAAAGACCTGGCCTGAAACTCACTGCACATTTCAGCGATGCCCCCTTCTCAGTAGTACCTCTGACTTAGGAGGTTGCCACCTGTGGGATCCCCGCCTAGGCATCCCTCATGCAGACCCTCTTGCTCTCTCAACTTCACCAAGTGATAGTTTGCAATTCATTGACTCCTCTTCCTTCTCTCCTTTGGATTCTTTTTCTGGTGTAACCTCTAACTCTCCTCTTTTTGCCTCAGCTGGTAGCAGTTCTGCCACTCCCCTGCCTGTTCCCTATGGATATGTCCATTTGCCCTGGGTTGTTGCTTTTCCTGGTAATGATAGTGATGTGATGTGCGAGGGCTACCCCCATTTATTCTAAGCAGTAACAGTTGCATTTCTCCCCTGTGAGCGTCATTCCATCCTAGGCATACACCTTACATGTCTCCTGCCTGGTCTACCCTCAGACATCCCTTGAACAGAGAATTGGCTTCTGCTAATTTGGGAATGTCTGGTACTGCATGCTATAGCACTTATATTGGTTGATGTTACCTGCTGTGATGGTATTCTCTCTACCGGAGCAGTAGCTGAAATGCTAGCAGACAGTACTTTATCCAGGCAGGCAGACCTAATCGGAGTAGCCTGGGGAAAGGCAGAGTTGTGAATTCTCTGCTACTTGGGGGCCTGAATTCAACTTACTGGTGTTTTCTGTCCGTTTTCTCAATCAAACCAAGTTAAGATTTGGTGAGGTAAAGCCTCAGTTTGGATTGATTGGTGCCCCACCAAAACTCATATGTCCCATTTCTCTTTTCATTTCCTTTCTTTTTTCCTGCTAGAAAGTTAAAATTGAAGGACTAGGAGTGGCTTAGTTAAGTGAAGACTTGGGCATCTTTGATAATTATTTTTCCTCCAGCATTGAGGATTAGAGTCATGGCAATGCTAAGATACCCAGTAGAGGTGGATAAGGTTTCCCTGGCTTGTGTGGGAACCTCGAGTTAATTTTGTTCCTGAATTAAGCTTCTAATTCCTTAAGGGTAGGTTTGCCCCTATCCAGCTGCTCTTTCTGTTGCCAGAGGCCATTTACTGCGTTTGTCCCTGGCAGGAAGTTAAATTTAGGGGGTCCTCAGCCAGACTCCCCATGGCTATAAAGGAGACTTGGCCTAAACTAGCCCCCTTGGTTTGGGCAGAGAGGGAGTCTGGTCAGGCTGCATTTGGCACCGTGGCTCAGGAATGCTGGGAATGTCAGTAGCGTAGGCTTCTTTCTCCCAGCCTGCCATGTGGAGCCCTACAGCCCACGCCTGGACTGAGAAGGTGGCAGGTTCCCAAGGGAGAGGTGGGGAGAATTGGTCTTTGAGGGGCTCTTCTGGAAGTGGTGTGGGTAGATTCTTGCCAGTACCCTTTTACTCTTGGGTTCTGGAGATACAGTCTAGTTTTTATACTTCTTCCCTACTGAACTCTGCTTTTTTCACTTCAGTGTCATTGTGATGAGGTGATCCCTTCCTCAGCCGATTCTGGAGTTTGAAAAGCAAGCTTGGAGGACTGTTCTGGGTCCAGGGAGAACTTGAAGTCTAGAACTTGTATAGGCAGTGCAGGAGATGAGGAGTCCCCCTTCGCTGTTAGCCAAGTTTGGCTGTGCTAGGTTTCCTGGTTTGTACTCTCGAGGAAAGAAAGAAAAGGTTTCAGTCTGCTTCTCGGAAAGGGTCTTCCCAGGGACTGTTTTTCTTCCAGTTTAGAATTTGTTGTGAAGCTGCTTGGTTAGATGCTGACCTAAGTTGGGCTTTTATGTGTGTGTAGGGGGTGGGGGTGGGAAGCAAAGGGGCTAGAAGTCTTGGGGGGAAGAGGACAGGCAAAATCTGGCTTTTCCCAGAGTCACCCATTTTGATTGCTCTTATTGCTCTTTTCCCTTCAG
Seq C2 exon
GAGTCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714:ENST00000292211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(56.1=63.3)
A:
NA
C2:
PF0577317=RWD=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains